Result of FASTA (omim) for
pFN21AE6324
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6324, 438 aa
1>>>pF1KE6324 438 - 438 aa - 438 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.1388+/-0.000357; mu= 23.8788+/- 0.022
mean_var=60.8675+/-12.500, 0's: 0 Z-trim(113.6): 12 B-trim: 4 in 1/50
Lambda= 0.164392
statistics sampled from 23070 (23075) to 23070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.271), width: 16
Scan time: 5.210
The best scores are: opt bits E(85289)
NP_005778 (OMIM: 601110,608750) dol-P-Man:Man(5)Gl ( 438) 3014 723.5 2.7e-208
XP_011510625 (OMIM: 601110,608750) PREDICTED: dol- ( 398) 2563 616.5 4e-176
NP_001006942 (OMIM: 601110,608750) dol-P-Man:Man(5 ( 390) 2562 616.2 4.6e-176
XP_011510624 (OMIM: 601110,608750) PREDICTED: dol- ( 405) 2562 616.2 4.8e-176
>>NP_005778 (OMIM: 601110,608750) dol-P-Man:Man(5)GlcNAc (438 aa)
initn: 3014 init1: 3014 opt: 3014 Z-score: 3860.5 bits: 723.5 E(85289): 2.7e-208
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 438 aa overlap (1-438:1-438)
10 20 30 40 50 60
pF1KE6 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL
370 380 390 400 410 420
430
pF1KE6 WLGPQPFPKSTQHSKKAH
::::::::::::::::::
NP_005 WLGPQPFPKSTQHSKKAH
430
>>XP_011510625 (OMIM: 601110,608750) PREDICTED: dol-P-Ma (398 aa)
initn: 2563 init1: 2563 opt: 2563 Z-score: 3283.0 bits: 616.5 E(85289): 4e-176
Smith-Waterman score: 2563; 99.5% identity (99.5% similar) in 375 aa overlap (64-438:24-398)
40 50 60 70 80 90
pF1KE6 LLLREPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQG
: :::::::::::::::::::::::::::
XP_011 MKTGYSDRRLAWWDARHGKRNLSVEDTEIDWKAYMAEVEGVINGTYDYTQLQG
10 20 30 40 50
100 110 120 130 140 150
pF1KE6 DTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFV
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE6 FFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLL
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE6 FAPGLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FAPGLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWT
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE6 VNWRFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VNWRFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPL
240 250 260 270 280 290
340 350 360 370 380 390
pF1KE6 TPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIE
300 310 320 330 340 350
400 410 420 430
pF1KE6 LSWNTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSWNTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
360 370 380 390
>>NP_001006942 (OMIM: 601110,608750) dol-P-Man:Man(5)Glc (390 aa)
initn: 2562 init1: 2562 opt: 2562 Z-score: 3281.8 bits: 616.2 E(85289): 4.6e-176
Smith-Waterman score: 2562; 100.0% identity (100.0% similar) in 372 aa overlap (67-438:19-390)
40 50 60 70 80 90
pF1KE6 REPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
::::::::::::::::::::::::::::::
NP_001 MFPAQAKENAGFSGCGGDTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
10 20 30 40
100 110 120 130 140 150
pF1KE6 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE6 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE6 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE6 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
230 240 250 260 270 280
340 350 360 370 380 390
pF1KE6 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
290 300 310 320 330 340
400 410 420 430
pF1KE6 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
::::::::::::::::::::::::::::::::::::::::::
NP_001 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
350 360 370 380 390
>>XP_011510624 (OMIM: 601110,608750) PREDICTED: dol-P-Ma (405 aa)
initn: 2562 init1: 2562 opt: 2562 Z-score: 3281.6 bits: 616.2 E(85289): 4.8e-176
Smith-Waterman score: 2562; 100.0% identity (100.0% similar) in 372 aa overlap (67-438:34-405)
40 50 60 70 80 90
pF1KE6 REPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
::::::::::::::::::::::::::::::
XP_011 VTQDTIKGIGSHLNQVGGVSKGFIEPPLEDTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE6 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE6 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
130 140 150 160 170 180
220 230 240 250 260 270
pF1KE6 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
190 200 210 220 230 240
280 290 300 310 320 330
pF1KE6 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
250 260 270 280 290 300
340 350 360 370 380 390
pF1KE6 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
310 320 330 340 350 360
400 410 420 430
pF1KE6 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
::::::::::::::::::::::::::::::::::::::::::
XP_011 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
370 380 390 400
438 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:06:43 2016 done: Tue Nov 8 12:06:43 2016
Total Scan time: 5.210 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]