FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6308, 393 aa
  1>>>pF1KE6308 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1323+/-0.00041; mu= 18.3948+/- 0.026
 mean_var=69.0826+/-13.480, 0's: 0 Z-trim(111.1): 31  B-trim: 27 in 2/51
 Lambda= 0.154308
 statistics sampled from 19630 (19633) to 19630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.23), width:  16
 Scan time:  6.780

The best scores are:                                      opt bits E(85289)
NP_002141 (OMIM: 140350,276710,609695) 4-hydroxyph ( 393) 2630 594.8 1.2e-169
NP_001165464 (OMIM: 140350,276710,609695) 4-hydrox ( 354) 2357 534.0 2.2e-151


>>NP_002141 (OMIM: 140350,276710,609695) 4-hydroxyphenyl  (393 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3166.7  bits: 594.8 E(85289): 1.2e-169
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)

               10        20        30        40        50        60
pF1KE6 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG
              310       320       330       340       350       360

              370       380       390   
pF1KE6 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
       :::::::::::::::::::::::::::::::::
NP_002 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
              370       380       390   

>>NP_001165464 (OMIM: 140350,276710,609695) 4-hydroxyphe  (354 aa)
 initn: 2357 init1: 2357 opt: 2357  Z-score: 2838.9  bits: 534.0 E(85289): 2.2e-151
Smith-Waterman score: 2357; 100.0% identity (100.0% similar) in 354 aa overlap (40-393:1-354)

      10        20        30        40        50        60         
pF1KE6 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF
                                     ::::::::::::::::::::::::::::::
NP_001                               MGFEPLAYRGLETGSREVVSHVIKQGKIVF
                                             10        20        30

      70        80        90       100       110       120         
pF1KE6 VLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFG
               40        50        60        70        80        90

     130       140       150       160       170       180         
pF1KE6 KVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQP
              100       110       120       130       140       150

     190       200       210       220       230       240         
pF1KE6 DQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKK
              160       170       180       190       200       210

     250       260       270       280       290       300         
pF1KE6 SQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIK
              220       230       240       250       260       270

     310       320       330       340       350       360         
pF1KE6 VKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFK
              280       290       300       310       320       330

     370       380       390   
pF1KE6 AFEEEQNLRGNLTNMETNGVVPGM
       ::::::::::::::::::::::::
NP_001 AFEEEQNLRGNLTNMETNGVVPGM
              340       350    




393 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:57:16 2016 done: Tue Nov  8 11:57:17 2016
 Total Scan time:  6.780 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]