FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6307, 314 aa
  1>>>pF1KE6307 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2730+/-0.00105; mu= 16.1509+/- 0.063
 mean_var=73.5427+/-14.381, 0's: 0 Z-trim(104.1): 47  B-trim: 38 in 1/50
 Lambda= 0.149556
 statistics sampled from 7693 (7729) to 7693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.237), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2           ( 314) 2046 450.9 5.8e-127
CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1          ( 323) 1012 227.8 8.6e-60


>>CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2                (314 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 2392.8  bits: 450.9 E(32554): 5.8e-127
Smith-Waterman score: 2046; 99.7% identity (99.7% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE6 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSTCWCVN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS18 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA
              250       260       270       280       290       300

              310    
pF1KE6 EIKEMGEMHRELNA
       ::::::::::::::
CCDS18 EIKEMGEMHRELNA
              310    

>>CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1               (323 aa)
 initn: 922 init1: 415 opt: 1012  Z-score: 1186.9  bits: 227.8 E(32554): 8.6e-60
Smith-Waterman score: 1012; 49.7% identity (78.8% similar) in 316 aa overlap (1-311:7-320)

                      10        20        30        40        50   
pF1KE6       MAPPQV-LAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGA
             .::: . : . ::. ::..  .:::..:.: . :..:    . . .::: ..:.
CCDS60 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS
               10        20        30        40        50        60

            60        70        80          90       100       110 
pF1KE6 QNTVICSKLAAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCN
         .: :: :..:::..::.:.. : .:  ..: : :: .::::::::::  : :::.:::
CCDS60 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN
               70        80        90       100       110       120

             120        130       140       150       160       170
pF1KE6 GTSTCWCVNTAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEI
        ::.:::::..::::::: :  . :.: :::. :.:.:.:.     .. ..: . :.. .
CCDS60 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE6 TTRYQLDPKFITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKK
         ::.: :::.... ::. .: :.: ::.:::. .::::.:.:::::.:.::::::... 
CCDS60 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG
              190       200       210       220       230       240

               240       250       260       270       280         
pF1KE6 -MDLTVNGEQLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVIS
        .:: : :: :...  .:::::.::  :.:::. : ::.::::::::.:.:::..::::.
CCDS60 GLDLRVRGEPLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVIT
              250         260       270       280       290        

     290       300       310    
pF1KE6 RKKRMAKYEKAEIKEMGEMHRELNA
        ... .::.:.::::.::...:   
CCDS60 NRRKSGKYKKVEIKELGELRKEPSL
      300       310       320   




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:35:15 2016 done: Mon Nov  7 19:35:15 2016
 Total Scan time:  1.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]