Result of FASTA (ccds) for
pFN21AE6303
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6303, 347 aa
1>>>pF1KE6303 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0425+/-0.000767; mu= 17.2415+/- 0.046
mean_var=58.4135+/-11.518, 0's: 0 Z-trim(107.6): 9 B-trim: 8 in 1/47
Lambda= 0.167810
statistics sampled from 9664 (9667) to 9664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.297), width: 16
Scan time: 2.000
The best scores are: opt bits E(32554)
CCDS5993.1 TUSC3 gene_id:7991|Hs108|chr8 ( 347) 2342 575.1 2.9e-164
CCDS5994.1 TUSC3 gene_id:7991|Hs108|chr8 ( 348) 2318 569.3 1.6e-162
CCDS14436.2 MAGT1 gene_id:84061|Hs108|chrX ( 367) 1643 405.9 2.6e-113
>>CCDS5993.1 TUSC3 gene_id:7991|Hs108|chr8 (347 aa)
initn: 2342 init1: 2342 opt: 2342 Z-score: 3062.6 bits: 575.1 E(32554): 2.9e-164
Smith-Waterman score: 2342; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE6 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 WIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 AMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAITMGMVLLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAITMGMVLLNE
250 260 270 280 290 300
310 320 330 340
pF1KE6 AATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSFLIK
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSFLIK
310 320 330 340
>>CCDS5994.1 TUSC3 gene_id:7991|Hs108|chr8 (348 aa)
initn: 2318 init1: 2318 opt: 2318 Z-score: 3031.2 bits: 569.3 E(32554): 1.6e-162
Smith-Waterman score: 2318; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KE6 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 WIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWAMVSLCIVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 AMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAITMGMVLLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAITMGMVLLNE
250 260 270 280 290 300
310 320 330 340
pF1KE6 AATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSFLIK
:::::::::::::::::::::::::::::::::::::::::::
CCDS59 AATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSDLDFE
310 320 330 340
>>CCDS14436.2 MAGT1 gene_id:84061|Hs108|chrX (367 aa)
initn: 1633 init1: 1633 opt: 1643 Z-score: 2147.7 bits: 405.9 E(32554): 2.6e-113
Smith-Waterman score: 1643; 69.1% identity (93.8% similar) in 324 aa overlap (24-346:43-366)
10 20 30 40 50
pF1KE6 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLC-IQLGGGQKKKENLLAEK
: ... ::..: . ...:.::: .:.::
CCDS14 RPTLRPSRSKVSLIEGRGANMAARWRFWCVSVTMVVALLIVCDVPSASAQRKKEMVLSEK
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE6 VEQLMEWSSRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQIL
: :::::...: ..::::::::...::::::::.:::::::: .::: ::.::.::.:::
CCDS14 VSQLMEWTNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVCKQADEEFQIL
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE6 ANSWRYSSAFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIG
:::::::::: :..::.:::.:::.::::.:::::::::..:: ::.:::.::..:: :
CCDS14 ANSWRYSSAFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKPKRGDTYELQVRG
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE6 FAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLRRNNLEFIYNKTGWA
:.:::.:.::::::::.:::.:::::.: . :.::....:::.::::.:.::..::::::
CCDS14 FSAEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNMEFLFNKTGWA
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE6 MVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAESHIILVLNAAIT
...::.:.::::::::::::::::::::::.:.:.:::::::::::::.::.:..:...:
CCDS14 FAALCFVLAMTSGQMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVT
260 270 280 290 300 310
300 310 320 330 340
pF1KE6 MGMVLLNEAATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSFLIK
.::::: ::::: :.:::.:.:..:.::::.:::..::::::::::::::::.
CCDS14 LGMVLLCEAATSDMDIGKRKIMCVAGIGLVVLFFSWMLSIFRSKYHGYPYSFLMS
320 330 340 350 360
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:54:38 2016 done: Tue Nov 8 11:54:38 2016
Total Scan time: 2.000 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]