FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6296, 183 aa
  1>>>pF1KE6296 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5838+/-0.000812; mu= 10.7751+/- 0.049
 mean_var=59.2536+/-11.646, 0's: 0 Z-trim(106.0): 17  B-trim: 0 in 0/50
 Lambda= 0.166616
 statistics sampled from 8747 (8756) to 8747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX        ( 183) 1228 303.4 5.2e-83
CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11          ( 183)  800 200.5 4.9e-52
CCDS4128.1 FTMT gene_id:94033|Hs108|chr5           ( 242)  752 189.0 1.9e-48
CCDS33070.1 FTL gene_id:2512|Hs108|chr19           ( 175)  576 146.6 7.6e-36


>>CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX             (183 aa)
 initn: 1228 init1: 1228 opt: 1228  Z-score: 1603.7  bits: 303.4 E(32554): 5.2e-83
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
              130       140       150       160       170       180

          
pF1KE6 KET
       :::
CCDS14 KET
          

>>CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11               (183 aa)
 initn: 798 init1: 798 opt: 800  Z-score: 1047.7  bits: 200.5 E(32554): 4.9e-52
Smith-Waterman score: 800; 65.0% identity (88.5% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
       :.::. :::::.:  . .:::: .:.::::.::.::::..::.::::::.:: .:::. :
CCDS41 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
        .. :::.:::.::: :::.: :.::.::.:. ::::: ::: :.:::::::::::.:..
CCDS41 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
       ::..:.::.:: :.:.:::.::::.::::: .:.::::. .::.::::::::: :::   
CCDS41 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
              130       140       150       160       170       180

          
pF1KE6 KET
       .:.
CCDS41 NES
          

>>CCDS4128.1 FTMT gene_id:94033|Hs108|chr5                (242 aa)
 initn: 765 init1: 749 opt: 752  Z-score: 983.3  bits: 189.0 E(32554): 1.9e-48
Smith-Waterman score: 752; 65.4% identity (85.5% similar) in 179 aa overlap (4-182:63-241)

                                          10        20        30   
pF1KE6                            MATAQPSQVRQKYDTNCDAAINSHITLELYTSY
                                     : ::.:::..  . .:::: .:.::::.::
CCDS41 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY
             40        50        60        70        80        90  

            40        50        60        70        80        90   
pF1KE6 LYLSMAFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKPECQG
       .:::::.::.::::::.:: ::::. : .. :::.::::::: :::.: :.::.::: . 
CCDS41 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD
            100       110       120       130       140       150  

           100       110       120       130       140       150   
pF1KE6 WESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYV
       ::::: ::: :. ::::::::::.:. :: .::::.:: :::..::.::::.::::: .:
CCDS41 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV
            160       170       180       190       200       210  

           160       170       180   
pF1KE6 SNLRKICSPEAGLAEYLFDKLTLGGRVKET
        :: :. .:.:::::::::  :::.. :. 
CCDS41 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN
            220       230       240  

>>CCDS33070.1 FTL gene_id:2512|Hs108|chr19                (175 aa)
 initn: 576 init1: 576 opt: 576  Z-score: 757.1  bits: 146.6 E(32554): 7.6e-36
Smith-Waterman score: 576; 49.4% identity (81.8% similar) in 170 aa overlap (7-176:3-172)

               10        20        30        40        50        60
pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
             ::.::.:.:. .::.:: ..: : .:: :::..:::.:::::::.  ..: .:.
CCDS33     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
       ..: :  ..:...:: :::.  ..::.::  . : .   ::..:. :::..::.::::. 
CCDS33 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
       :.  . ::.:: :::.:.: :.:: ::..: ...::... .:::::.::::..:::    
CCDS33 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
        120       130       140       150       160       170      

          
pF1KE6 KET




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:52:51 2016 done: Tue Nov  8 11:52:52 2016
 Total Scan time:  1.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]