FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6289, 306 aa
  1>>>pF1KE6289 306 - 306 aa - 306 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3568+/-0.000289; mu= 16.7553+/- 0.018
 mean_var=77.4423+/-15.802, 0's: 0 Z-trim(118.0): 3  B-trim: 0 in 0/54
 Lambda= 0.145742
 statistics sampled from 30597 (30599) to 30597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.359), width:  16
 Scan time:  5.630

The best scores are:                                      opt bits E(85289)
NP_115727 (OMIM: 611850) 39S ribosomal protein L45 ( 306) 2093 448.9 5.8e-126
NP_001265208 (OMIM: 611850) 39S ribosomal protein  ( 256) 1160 252.7 5.7e-67


>>NP_115727 (OMIM: 611850) 39S ribosomal protein L45, mi  (306 aa)
 initn: 2093 init1: 2093 opt: 2093  Z-score: 2382.5  bits: 448.9 E(85289): 5.8e-126
Smith-Waterman score: 2093; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_115 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
              250       260       270       280       290       300

             
pF1KE6 QKPQLA
       ::::::
NP_115 QKPQLA
             

>>NP_001265208 (OMIM: 611850) 39S ribosomal protein L45,  (256 aa)
 initn: 1194 init1: 1150 opt: 1160  Z-score: 1323.4  bits: 252.7 E(85289): 5.7e-67
Smith-Waterman score: 1637; 83.3% identity (83.3% similar) in 306 aa overlap (1-306:1-256)

               10        20        30        40        50        60
pF1KE6 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPIPQGFSCLSRFLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
NP_001 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFP----------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE6 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
                                               ::::::::::::::::::::
NP_001 ----------------------------------------TLAIYDRFGRLMYGQEDVPK
                                                      180       190

              250       260       270       280       290       300
pF1KE6 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
              200       210       220       230       240       250

             
pF1KE6 QKPQLA
       ::::::
NP_001 QKPQLA
             




306 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:49:37 2016 done: Tue Nov  8 11:49:38 2016
 Total Scan time:  5.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]