FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6286, 290 aa
  1>>>pF1KE6286 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0427+/-0.00107; mu= 11.4008+/- 0.064
 mean_var=68.7379+/-14.178, 0's: 0 Z-trim(102.6): 26  B-trim: 15 in 1/47
 Lambda= 0.154695
 statistics sampled from 7019 (7022) to 7019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.216), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS1596.1 TSNAX gene_id:7257|Hs108|chr1           ( 290) 1890 431.0 4.9e-121


>>CCDS1596.1 TSNAX gene_id:7257|Hs108|chr1                (290 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 2286.5  bits: 431.0 E(32554): 4.9e-121
Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:47:39 2016 done: Tue Nov  8 11:47:39 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]