Result of FASTA (omim) for
pFN21AE6283
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6283, 268 aa
1>>>pF1KE6283 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.6819+/-0.000322; mu= -15.2452+/- 0.020
mean_var=292.6128+/-59.858, 0's: 0 Z-trim(124.3): 5 B-trim: 0 in 0/61
Lambda= 0.074977
statistics sampled from 45682 (45688) to 45682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.536), width: 16
Scan time: 6.610
The best scores are: opt bits E(85289)
NP_112589 (OMIM: 607749) cell division cycle-assoc ( 268) 1812 208.5 1.1e-53
NP_001284533 (OMIM: 607749) cell division cycle-as ( 182) 1232 145.6 6e-35
NP_001284532 (OMIM: 607749) cell division cycle-as ( 219) 1229 145.4 8.8e-35
NP_001284531 (OMIM: 607749) cell division cycle-as ( 243) 1082 129.5 5.9e-30
NP_001317948 (OMIM: 607749) cell division cycle-as ( 105) 705 88.5 5.3e-18
>>NP_112589 (OMIM: 607749) cell division cycle-associate (268 aa)
initn: 1812 init1: 1812 opt: 1812 Z-score: 1084.9 bits: 208.5 E(85289): 1.1e-53
Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
190 200 210 220 230 240
250 260
pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES
::::::::::::::::::::::::::::
NP_112 RLLKTGGRAWEQGQDHDKENQHFPLVES
250 260
>>NP_001284533 (OMIM: 607749) cell division cycle-associ (182 aa)
initn: 1232 init1: 1232 opt: 1232 Z-score: 748.5 bits: 145.6 E(85289): 6e-35
Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
::
NP_001 SG
>>NP_001284532 (OMIM: 607749) cell division cycle-associ (219 aa)
initn: 1307 init1: 1229 opt: 1229 Z-score: 745.4 bits: 145.4 E(85289): 8.8e-35
Smith-Waterman score: 1229; 99.5% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
:.:
NP_001 SASSVPDFEEAVPGTCGHSHPVSCDSQAAHPVIVAREDA
190 200 210
>>NP_001284531 (OMIM: 607749) cell division cycle-associ (243 aa)
initn: 1081 init1: 1081 opt: 1082 Z-score: 658.8 bits: 129.5 E(85289): 5.9e-30
Smith-Waterman score: 1584; 90.7% identity (90.7% similar) in 268 aa overlap (1-268:1-243)
10 20 30 40 50 60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
::::::::::::::::::::::: ::::::::::::
NP_001 AQDSDPRSPTLGIARTPMKTSSG-------------------------EPVLPPEAPLSS
70 80 90
130 140 150 160 170 180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
160 170 180 190 200 210
250 260
pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES
::::::::::::::::::::::::::::
NP_001 RLLKTGGRAWEQGQDHDKENQHFPLVES
220 230 240
>>NP_001317948 (OMIM: 607749) cell division cycle-associ (105 aa)
initn: 705 init1: 705 opt: 705 Z-score: 444.1 bits: 88.5 E(85289): 5.3e-18
Smith-Waterman score: 705; 100.0% identity (100.0% similar) in 105 aa overlap (78-182:1-105)
50 60 70 80 90 100
pF1KE6 GLPAGEQLEGLKHAQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLP
::::::::::::::::::::::::::::::
NP_001 MKTSSGDPPSPLVKQLSEVFETEDSKSNLP
10 20 30
110 120 130 140 150 160
pF1KE6 PEPVLPPEAPLSSELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPVLPPEAPLSSELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE6 SDKPSRDPETPRSSGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSEN
:::::::::::::::
NP_001 SDKPSRDPETPRSSG
100
268 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:45:54 2016 done: Tue Nov 8 11:45:55 2016
Total Scan time: 6.610 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]