FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6283, 268 aa
  1>>>pF1KE6283 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3376+/-0.000833; mu= -7.2496+/- 0.050
 mean_var=247.2783+/-50.913, 0's: 0 Z-trim(116.3): 8  B-trim: 277 in 1/52
 Lambda= 0.081561
 statistics sampled from 16879 (16885) to 16879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.519), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS8565.1 CDCA3 gene_id:83461|Hs108|chr12         ( 268) 1812 225.2 3.8e-59
CCDS73428.1 CDCA3 gene_id:83461|Hs108|chr12        ( 182) 1232 156.8 9.7e-39
CCDS76513.1 CDCA3 gene_id:83461|Hs108|chr12        ( 219) 1229 156.5 1.4e-38
CCDS76512.1 CDCA3 gene_id:83461|Hs108|chr12        ( 243) 1082 139.3 2.5e-33


>>CCDS8565.1 CDCA3 gene_id:83461|Hs108|chr12              (268 aa)
 initn: 1812 init1: 1812 opt: 1812  Z-score: 1175.3  bits: 225.2 E(32554): 3.8e-59
Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
              190       200       210       220       230       240

              250       260        
pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES
       ::::::::::::::::::::::::::::
CCDS85 RLLKTGGRAWEQGQDHDKENQHFPLVES
              250       260        

>>CCDS73428.1 CDCA3 gene_id:83461|Hs108|chr12             (182 aa)
 initn: 1232 init1: 1232 opt: 1232  Z-score: 809.0  bits: 156.8 E(32554): 9.7e-39
Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
       ::                                                          
CCDS73 SG                                                          
                                                                   

>>CCDS76513.1 CDCA3 gene_id:83461|Hs108|chr12             (219 aa)
 initn: 1307 init1: 1229 opt: 1229  Z-score: 805.9  bits: 156.5 E(32554): 1.4e-38
Smith-Waterman score: 1229; 99.5% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
       :.:                                                         
CCDS76 SASSVPDFEEAVPGTCGHSHPVSCDSQAAHPVIVAREDA                     
              190       200       210                              

>>CCDS76512.1 CDCA3 gene_id:83461|Hs108|chr12             (243 aa)
 initn: 1081 init1: 1081 opt: 1082  Z-score: 711.7  bits: 139.3 E(32554): 2.5e-33
Smith-Waterman score: 1584; 90.7% identity (90.7% similar) in 268 aa overlap (1-268:1-243)

               10        20        30        40        50        60
pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS
       :::::::::::::::::::::::                         ::::::::::::
CCDS76 AQDSDPRSPTLGIARTPMKTSSG-------------------------EPVLPPEAPLSS
               70        80                                 90     

              130       140       150       160       170       180
pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG
         160       170       180       190       200       210     

              250       260        
pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES
       ::::::::::::::::::::::::::::
CCDS76 RLLKTGGRAWEQGQDHDKENQHFPLVES
         220       230       240   




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:45:54 2016 done: Tue Nov  8 11:45:54 2016
 Total Scan time:  2.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]