FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6282, 256 aa
  1>>>pF1KE6282 256 - 256 aa - 256 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9771+/-0.000365; mu= 12.5207+/- 0.023
 mean_var=89.1898+/-17.856, 0's: 0 Z-trim(114.9): 2  B-trim: 27 in 1/56
 Lambda= 0.135805
 statistics sampled from 24997 (24999) to 24997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.293), width:  16
 Scan time:  5.370

The best scores are:                                      opt bits E(85289)
NP_001679 (OMIM: 603270) ATP synthase F(0) complex ( 256) 1643 331.6 8.7e-91


>>NP_001679 (OMIM: 603270) ATP synthase F(0) complex sub  (256 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1750.9  bits: 331.6 E(85289): 8.7e-91
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE6 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI
              190       200       210       220       230       240

              250      
pF1KE6 ADLKLLAKKAQAQPVM
       ::::::::::::::::
NP_001 ADLKLLAKKAQAQPVM
              250      




256 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:45:19 2016 done: Tue Nov  8 11:45:20 2016
 Total Scan time:  5.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]