Result of FASTA (ccds) for
pFN21AE6279
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6279, 242 aa
1>>>pF1KE6279 242 - 242 aa - 242 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5939+/-0.000616; mu= 15.0501+/- 0.038
mean_var=91.4975+/-18.383, 0's: 0 Z-trim(114.1): 15 B-trim: 0 in 0/55
Lambda= 0.134082
statistics sampled from 14712 (14726) to 14712 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.452), width: 16
Scan time: 2.250
The best scores are: opt bits E(32554)
CCDS35247.1 SLC35A2 gene_id:7355|Hs108|chrX ( 242) 1592 316.9 7.6e-87
CCDS75975.1 SLC35A2 gene_id:7355|Hs108|chrX ( 218) 1403 280.3 7.1e-76
CCDS75974.1 SLC35A2 gene_id:7355|Hs108|chrX ( 224) 1227 246.3 1.3e-65
CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX ( 393) 875 178.4 6.1e-45
CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX ( 396) 875 178.4 6.2e-45
CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX ( 406) 719 148.2 7.6e-36
CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX ( 421) 686 141.9 6.5e-34
CCDS60205.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 220) 364 79.3 2.3e-15
CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 325) 364 79.5 3e-15
CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 367) 364 79.5 3.3e-15
CCDS65253.1 SLC35A2 gene_id:7355|Hs108|chrX ( 332) 315 70.0 2.2e-12
>>CCDS35247.1 SLC35A2 gene_id:7355|Hs108|chrX (242 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1672.7 bits: 316.9 E(32554): 7.6e-87
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 WRPHHGALSAKVSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 WRPHHGALSAKVSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSFLP
190 200 210 220 230 240
pF1KE6 GH
::
CCDS35 GH
>>CCDS75975.1 SLC35A2 gene_id:7355|Hs108|chrX (218 aa)
initn: 1403 init1: 1403 opt: 1403 Z-score: 1475.7 bits: 280.3 E(32554): 7.1e-76
Smith-Waterman score: 1403; 100.0% identity (100.0% similar) in 212 aa overlap (31-242:7-218)
10 20 30 40 50 60
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
::::::::::::::::::::::::::::::
CCDS75 MKLCRDAHRRLKYISLAVLVVQNASLILSIRYARTL
10 20 30
70 80 90 100 110 120
pF1KE6 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 WRPHHGALSAKVSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WRPHHGALSAKVSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSFLP
160 170 180 190 200 210
pF1KE6 GH
::
CCDS75 GH
>>CCDS75974.1 SLC35A2 gene_id:7355|Hs108|chrX (224 aa)
initn: 1250 init1: 1226 opt: 1227 Z-score: 1291.5 bits: 246.3 E(32554): 1.3e-65
Smith-Waterman score: 1230; 86.3% identity (90.2% similar) in 234 aa overlap (1-231:1-222)
10 20 30 40 50 60
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 WRPHHGALSAKVSAGEVRAGSNGGTQGRG---TGVEGVGHLQDPSRHPPGPGSSGFGRWS
::::::::::::. ::.: .:.: .: : . : ::...
CCDS75 WRPHHGALSAKVAH-----------QGEGFLAAGIEDIG-LASFSLLALGPAGTKL
190 200 210 220
240
pF1KE6 FLPGH
>>CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX (393 aa)
initn: 907 init1: 875 opt: 875 Z-score: 920.3 bits: 178.4 E(32554): 6.1e-45
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
::::::::::::::::::::::
CCDS43 IYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVA
130 140 150 160 170 180
>>CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX (396 aa)
initn: 907 init1: 875 opt: 875 Z-score: 920.2 bits: 178.4 E(32554): 6.2e-45
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPP
::::::::::::::::::::::
CCDS14 IYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVA
130 140 150 160 170 180
>>CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX (406 aa)
initn: 893 init1: 686 opt: 719 Z-score: 757.0 bits: 148.2 E(32554): 7.6e-36
Smith-Waterman score: 839; 91.6% identity (91.6% similar) in 155 aa overlap (1-142:1-155)
10 20 30 40
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASA-------------AHRRLKYISLAVLVVQN
:::::::::::::::::::::::::::::: :::::::::::::::::
CCDS75 MAAVGAGGSTAAPGPGAVSAGALEPGTASAGETVCPSSRMGGGAHRRLKYISLAVLVVQN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 ASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 QYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAA
:::::::::::::::::::::::::::::::::::
CCDS75 QYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 SRAATTTAAVFPPWRPHHGALSAKVSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPG
CCDS75 QWASLLLLFTGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS
190 200 210 220 230 240
>>CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX (421 aa)
initn: 893 init1: 686 opt: 686 Z-score: 722.3 bits: 141.9 E(32554): 6.5e-34
Smith-Waterman score: 809; 83.5% identity (83.5% similar) in 170 aa overlap (1-142:1-170)
10 20 30
pF1KE6 MAAVGAGGSTAAPGPGAVSAGALEPGTASA----------------------------AH
:::::::::::::::::::::::::::::: ::
CCDS65 MAAVGAGGSTAAPGPGAVSAGALEPGTASAELLLTWEEAEARGQGLPQPLPDTSVRIPAH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 RRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE6 NVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQPSPRCSQSHS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTT
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE6 LCLCLRLRALRSPAASRAATTTAAVFPPWRPHHGALSAKVSAGEVRAGSNGGTQGRGTGV
CCDS65 ALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLS
190 200 210 220 230 240
>>CCDS60205.1 SLC35A3 gene_id:23443|Hs108|chr1 (220 aa)
initn: 358 init1: 247 opt: 364 Z-score: 389.4 bits: 79.3 E(32554): 2.3e-15
Smith-Waterman score: 364; 40.1% identity (70.9% similar) in 172 aa overlap (35-200:5-175)
10 20 30 40 50 60
pF1KE6 GAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
:::.::..:: :..::.:..::.::: :
CCDS60 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
10 20 30
70 80 90 100 110 120
pF1KE6 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS60 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
40 50 60 70 80 90
130 140 150 160 170
pF1KE6 TLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAA---SRAATTTAAVFP
:::::: :::.::: :::.: . . . . . . . . . . : . :...:
CCDS60 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE6 PWRPHHGALSAK-VSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSF
: : . :..: .::: .:
CCDS60 QW-PSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVS
160 170 180 190 200 210
>>CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 (325 aa)
initn: 342 init1: 247 opt: 364 Z-score: 387.2 bits: 79.5 E(32554): 3e-15
Smith-Waterman score: 364; 40.1% identity (70.9% similar) in 172 aa overlap (35-200:5-175)
10 20 30 40 50 60
pF1KE6 GAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
:::.::..:: :..::.:..::.::: :
CCDS76 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
10 20 30
70 80 90 100 110 120
pF1KE6 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS76 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
40 50 60 70 80 90
130 140 150 160 170
pF1KE6 TLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAA---SRAATTTAAVFP
:::::: :::.::: :::.: . . . . . . . . . . : . :...:
CCDS76 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE6 PWRPHHGALSAK-VSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSF
: : . :..: .::: .:
CCDS76 QW-PSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGF
160 170 180 190 200 210
>>CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 (367 aa)
initn: 342 init1: 247 opt: 364 Z-score: 386.5 bits: 79.5 E(32554): 3.3e-15
Smith-Waterman score: 364; 40.1% identity (70.9% similar) in 172 aa overlap (35-200:47-217)
10 20 30 40 50 60
pF1KE6 GAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
:::.::..:: :..::.:..::.::: :
CCDS60 DQHLELKKPQELKEMERLPLANEDKTMFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
20 30 40 50 60 70
70 80 90 100 110 120
pF1KE6 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS60 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
80 90 100 110 120 130
130 140 150 160 170
pF1KE6 TLQNNLQYVAISNLPAATFQPSPRCSQSHSLCLCLRLRALRSPAA---SRAATTTAAVFP
:::::: :::.::: :::.: . . . . . . . . . . : . :...:
CCDS60 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE6 PWRPHHGALSAK-VSAGEVRAGSNGGTQGRGTGVEGVGHLQDPSRHPPGPGSSGFGRWSF
: : . :..: .::: .:
CCDS60 QW-PSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGF
200 210 220 230 240 250
242 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:44:07 2016 done: Tue Nov 8 11:44:07 2016
Total Scan time: 2.250 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]