FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6277, 224 aa
  1>>>pF1KE6277 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0945+/-0.0007; mu= 11.3466+/- 0.042
 mean_var=95.1168+/-19.089, 0's: 0 Z-trim(112.5): 7  B-trim: 0 in 0/50
 Lambda= 0.131506
 statistics sampled from 13221 (13226) to 13221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.406), width:  16
 Scan time:  1.510

The best scores are:                                      opt bits E(32554)
CCDS5379.1 NUPL2 gene_id:11097|Hs108|chr7          ( 423) 1405 276.1 2.4e-74


>>CCDS5379.1 NUPL2 gene_id:11097|Hs108|chr7               (423 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1448.2  bits: 276.1 E(32554): 2.4e-74
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KE6 MAICQFFLQGRCRFGDRCWNEHPGARGAGGGRQQPQQQPSGNNRRGWNTTSQRYSNVIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAICQFFLQGRCRFGDRCWNEHPGARGAGGGRQQPQQQPSGNNRRGWNTTSQRYSNVIQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SSFSKSTPWGGSRDQEKPYFSSFDSGASTNRKEGFGLSENPFASLSPDEQKDEKKLLEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SSFSKSTPWGGSRDQEKPYFSSFDSGASTNRKEGFGLSENPFASLSPDEQKDEKKLLEGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VKDMEVWESSGQWMFSVYSPVKKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VKDMEVWESSGQWMFSVYSPVKKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQR
              130       140       150       160       170       180

              190       200       210       220                    
pF1KE6 LINQWRNRVNELKSLNISTKVALKCLWKIYTHLSPKIYGPDCAL                
       :::::::::::::::::::::::                                     
CCDS53 LINQWRNRVNELKSLNISTKVALLSDVKDGVNQAAPAFGFGSSQAATFMSPGFPVNNSSS
              190       200       210       220       230       240




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:43:06 2016 done: Tue Nov  8 11:43:06 2016
 Total Scan time:  1.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]