Result of FASTA (ccds) for
pFN21AE6276
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6276, 220 aa
1>>>pF1KE6276 220 - 220 aa - 220 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0491+/-0.00108; mu= 14.5865+/- 0.064
mean_var=54.7906+/-11.057, 0's: 0 Z-trim(101.2): 40 B-trim: 0 in 0/50
Lambda= 0.173269
statistics sampled from 6389 (6416) to 6389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.555), E-opt: 0.2 (0.197), width: 16
Scan time: 1.390
The best scores are: opt bits E(32554)
CCDS60205.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 220) 1366 349.8 8.2e-97
CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 325) 1313 336.6 1.1e-92
CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 367) 1313 336.6 1.2e-92
CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX ( 393) 690 180.9 1e-45
CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX ( 396) 690 180.9 1e-45
CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX ( 406) 690 180.9 1e-45
CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX ( 421) 690 180.9 1.1e-45
CCDS5010.1 SLC35A1 gene_id:10559|Hs108|chr6 ( 337) 526 139.8 1.9e-33
CCDS65253.1 SLC35A2 gene_id:7355|Hs108|chrX ( 332) 503 134.1 1e-31
CCDS55043.1 SLC35A1 gene_id:10559|Hs108|chr6 ( 278) 420 113.3 1.5e-25
CCDS75974.1 SLC35A2 gene_id:7355|Hs108|chrX ( 224) 371 101.0 6.2e-22
CCDS75975.1 SLC35A2 gene_id:7355|Hs108|chrX ( 218) 364 99.3 2e-21
CCDS35247.1 SLC35A2 gene_id:7355|Hs108|chrX ( 242) 364 99.3 2.2e-21
>>CCDS60205.1 SLC35A3 gene_id:23443|Hs108|chr1 (220 aa)
initn: 1366 init1: 1366 opt: 1366 Z-score: 1851.6 bits: 349.8 E(32554): 8.2e-97
Smith-Waterman score: 1366; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVL
130 140 150 160 170 180
190 200 210 220
pF1KE6 TACFSSGFAGVYFEKILKETKQSVWIRNIQLVSFSLEPSL
::::::::::::::::::::::::::::::::::::::::
CCDS60 TACFSSGFAGVYFEKILKETKQSVWIRNIQLVSFSLEPSL
190 200 210 220
>>CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 (325 aa)
initn: 1312 init1: 1312 opt: 1313 Z-score: 1777.3 bits: 336.6 E(32554): 1.1e-92
Smith-Waterman score: 1313; 99.1% identity (99.1% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVL
130 140 150 160 170 180
190 200 210 220
pF1KE6 TACFSSGFAGVYFEKILKETKQSVWIRNIQLVSFSLEPSL
::::::::::::::::::::::::::::::: :
CCDS76 TACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGY
190 200 210 220 230 240
CCDS76 NRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFL
250 260 270 280 290 300
>>CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 (367 aa)
initn: 1312 init1: 1312 opt: 1313 Z-score: 1776.5 bits: 336.6 E(32554): 1.2e-92
Smith-Waterman score: 1313; 99.1% identity (99.1% similar) in 214 aa overlap (1-214:43-256)
10 20 30
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTL
::::::::::::::::::::::::::::::
CCDS60 TDAPDQHLELKKPQELKEMERLPLANEDKTMFANLKYVSLGILVFQTTSLVLTMRYSRTL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE6 KEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIP
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE6 SGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE6 VAFVQWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VAFVQWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQ
200 210 220 230 240 250
220
pF1KE6 LVSFSLEPSL
: :
CCDS60 LGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILK
260 270 280 290 300 310
>>CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX (393 aa)
initn: 699 init1: 440 opt: 690 Z-score: 934.4 bits: 180.9 E(32554): 1e-45
Smith-Waterman score: 690; 54.8% identity (81.4% similar) in 210 aa overlap (5-214:35-241)
10 20 30
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
:::.::..:: :..::.:..::.::: :
CCDS43 GAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS43 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE6 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
:::::: :::.::: :::.:::::::::::::::: ::...:. :: ::..:.::::.:
CCDS43 TLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE6 QWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVSF
: . . . :. . .:: ::...:.:::::::::::::: .. :::.::.:: :
CCDS43 QAQQAGGGGPRPLDQNPG-AGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLF
190 200 210 220 230 240
220
pF1KE6 SLEPSL
CCDS43 GTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFAT
250 260 270 280 290 300
>>CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX (396 aa)
initn: 699 init1: 440 opt: 690 Z-score: 934.3 bits: 180.9 E(32554): 1e-45
Smith-Waterman score: 690; 54.8% identity (81.4% similar) in 210 aa overlap (5-214:35-241)
10 20 30
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
:::.::..:: :..::.:..::.::: :
CCDS14 GAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS14 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE6 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
:::::: :::.::: :::.:::::::::::::::: ::...:. :: ::..:.::::.:
CCDS14 TLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE6 QWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVSF
: . . . :. . .:: ::...:.:::::::::::::: .. :::.::.:: :
CCDS14 QAQQAGGGGPRPLDQNPG-AGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLF
190 200 210 220 230 240
220
pF1KE6 SLEPSL
CCDS14 GTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFAT
250 260 270 280 290 300
>>CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX (406 aa)
initn: 699 init1: 440 opt: 690 Z-score: 934.2 bits: 180.9 E(32554): 1e-45
Smith-Waterman score: 690; 54.8% identity (81.4% similar) in 210 aa overlap (5-214:48-254)
10 20 30
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
:::.::..:: :..::.:..::.::: :
CCDS75 VSAGALEPGTASAGETVCPSSRMGGGAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE6 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS75 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE6 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
:::::: :::.::: :::.:::::::::::::::: ::...:. :: ::..:.::::.:
CCDS75 TLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIV
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE6 QWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVSF
: . . . :. . .:: ::...:.:::::::::::::: .. :::.::.:: :
CCDS75 QAQQAGGGGPRPLDQNPG-AGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLF
200 210 220 230 240 250
220
pF1KE6 SLEPSL
CCDS75 GTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFAT
260 270 280 290 300 310
>>CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX (421 aa)
initn: 699 init1: 440 opt: 690 Z-score: 933.9 bits: 180.9 E(32554): 1.1e-45
Smith-Waterman score: 690; 54.8% identity (81.4% similar) in 210 aa overlap (5-214:63-269)
10 20 30
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEG
:::.::..:: :..::.:..::.::: :
CCDS65 LLTWEEAEARGQGLPQPLPDTSVRIPAHRRLKYISLAVLVVQNASLILSIRYARTLP--G
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 PRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIY
:....::::.::.:: ..:.::.. ... ... : ::. .: . ..:::::.:: ::
CCDS65 DRFFATTAVVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIY
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE6 TLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFV
:::::: :::.::: :::.:::::::::::::::: ::...:. :: ::..:.::::.:
CCDS65 TLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIV
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE6 QWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVSF
: . . . :. . .:: ::...:.:::::::::::::: .. :::.::.:: :
CCDS65 QAQQAGGGGPRPLDQNPG-AGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLF
220 230 240 250 260
220
pF1KE6 SLEPSL
CCDS65 GTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFAT
270 280 290 300 310 320
>>CCDS5010.1 SLC35A1 gene_id:10559|Hs108|chr6 (337 aa)
initn: 464 init1: 306 opt: 526 Z-score: 713.9 bits: 139.8 E(32554): 1.9e-33
Smith-Waterman score: 526; 41.3% identity (75.5% similar) in 208 aa overlap (5-211:12-213)
10 20 30 40 50
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMA
.: :........ ....::.:: .: :.:.::: ..:..:..
CCDS50 MAAPRDNVTLLFKLYCLAVMTLMAAVYTIALRYTRTSDKE--LYFSTTAVCITEVIKLLL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 CILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATY
. .. :.. :: .. :....:..: : :::..:: .:..:::. ..::::::::.:
CCDS50 SVGILAKETG-SLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLDAAVY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 QVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQW-PSDSQLDSKELSAGSQ
:::::::: ::: .: ::.. :. ::.:. .: .::..::: :... .: . .
CCDS50 QVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQA---TKVVVEQNP
120 130 140 150 160 170
180 190 200 210 220
pF1KE6 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLVSFSLEPSL
..:. :. : . ::::::::::.:: . :.:.::::.
CCDS50 LLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIIVTLAGVYLSDGAEIK
180 190 200 210 220 230
CCDS50 EKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQ
240 250 260 270 280 290
>>CCDS65253.1 SLC35A2 gene_id:7355|Hs108|chrX (332 aa)
initn: 509 init1: 345 opt: 503 Z-score: 682.9 bits: 134.1 E(32554): 1e-31
Smith-Waterman score: 503; 56.9% identity (78.4% similar) in 153 aa overlap (62-214:29-180)
40 50 60 70 80 90
pF1KE6 EEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPS
: ... : ::. .: . ..:::::.::
CCDS65 MAAVGAGGSTAAPGPGAVSAGALEPGTASAGNVKHLVLFLHEAVLVQYVDTLKLAVPS
10 20 30 40 50
100 110 120 130 140 150
pF1KE6 GIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGV
:::::::: :::.::: :::.:::::::::::::::: ::...:. :: ::..:.:::
CCDS65 LIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGV
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE6 AFVQWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL
:.:: . . . :. . .:: ::...:.:::::::::::::: .. :::.::.::
CCDS65 AIVQAQQAGGGGPRPLDQNPG-AGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQL
120 130 140 150 160 170
220
pF1KE6 VSFSLEPSL
:
CCDS65 GLFGTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKG
180 190 200 210 220 230
>>CCDS55043.1 SLC35A1 gene_id:10559|Hs108|chr6 (278 aa)
initn: 373 init1: 306 opt: 420 Z-score: 572.0 bits: 113.3 E(32554): 1.5e-25
Smith-Waterman score: 420; 37.4% identity (71.4% similar) in 203 aa overlap (5-200:12-208)
10 20 30 40 50
pF1KE6 MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMA
.: :........ ....::.:: .: :.:.::: ..:..:..
CCDS55 MAAPRDNVTLLFKLYCLAVMTLMAAVYTIALRYTRTSDKE--LYFSTTAVCITEVIKLLL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 CILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATY
. .. :.. :: .. :....:..: : :::..:: .:..:::. ..::::::::.:
CCDS55 SVGILAKETG-SLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLDAAVY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 QVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQW-PSDSQLDSKELSAGSQ
:::::::: ::: .: ::.. :. ::.:. .: .::..::: :... .: . .
CCDS55 QVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQA---TKVVVEQNP
120 130 140 150 160 170
180 190 200 210 220
pF1KE6 FVGLMAVLTACFSSGFA------GVYFEKILKETKQSVWIRNIQLVSFSLEPSL
..:. :. : . :::: :.: ..: :
CCDS55 LLGFGAIAIAVLCSGFAVLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGL
180 190 200 210 220 230
CCDS55 QITLTFALGTLLVCVSIYLYGLPRQDTTSIQQGETASKERVIGV
240 250 260 270
220 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:42:37 2016 done: Tue Nov 8 11:42:38 2016
Total Scan time: 1.390 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]