Result of FASTA (omim) for
pFN21AE6275
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6275, 205 aa
1>>>pF1KE6275 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6725+/-0.000422; mu= 16.5542+/- 0.026
mean_var=59.6985+/-12.494, 0's: 0 Z-trim(109.4): 34 B-trim: 0 in 0/51
Lambda= 0.165994
statistics sampled from 17515 (17538) to 17515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.206), width: 16
Scan time: 4.040
The best scores are: opt bits E(85289)
NP_004038 (OMIM: 603717) V-type proton ATPase 21 k ( 205) 1339 329.2 2.8e-90
NP_001281262 (OMIM: 603717) V-type proton ATPase 2 ( 261) 1288 317.1 1.6e-86
NP_001034546 (OMIM: 603717) V-type proton ATPase 2 ( 158) 1013 251.1 7.3e-67
NP_001685 (OMIM: 108745) V-type proton ATPase 16 k ( 155) 207 58.0 9.2e-09
NP_001185498 (OMIM: 108745) V-type proton ATPase 1 ( 155) 207 58.0 9.2e-09
>>NP_004038 (OMIM: 603717) V-type proton ATPase 21 kDa p (205 aa)
initn: 1339 init1: 1339 opt: 1339 Z-score: 1741.7 bits: 329.2 E(85289): 2.8e-90
Smith-Waterman score: 1339; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
130 140 150 160 170 180
190 200
pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD
:::::::::::::::::::::::::
NP_004 IFGSAIGLFGVIVAILQTSRVKMGD
190 200
>>NP_001281262 (OMIM: 603717) V-type proton ATPase 21 kD (261 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1674.3 bits: 317.1 E(85289): 1.6e-86
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
130 140 150 160 170 180
190 200
pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD
:::::::::::::::::
NP_001 IFGSAIGLFGVIVAILQVMNPLGKPLCPCPQPSLTLLLEKLKCSPSLPITIDSPKQLPPP
190 200 210 220 230 240
>>NP_001034546 (OMIM: 603717) V-type proton ATPase 21 kD (158 aa)
initn: 1013 init1: 1013 opt: 1013 Z-score: 1321.4 bits: 251.1 E(85289): 7.3e-67
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 158 aa overlap (48-205:1-158)
20 30 40 50 60 70
pF1KE6 CALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSII
::::::::::::::::::::::::::::::
NP_001 MWSNLGIGLAISLSVVGAAWGIYITGSSII
10 20 30
80 90 100 110 120 130
pF1KE6 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE6 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ
100 110 120 130 140 150
200
pF1KE6 TSRVKMGD
::::::::
NP_001 TSRVKMGD
>>NP_001685 (OMIM: 108745) V-type proton ATPase 16 kDa p (155 aa)
initn: 417 init1: 192 opt: 207 Z-score: 278.3 bits: 58.0 E(85289): 9.2e-09
Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (52-200:17-155)
30 40 50 60 70 80
pF1KE6 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV
.: . :. .:..:::.: .:..: . .:
NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV
10 20 30 40
90 100 110 120 130 140
pF1KE6 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG
:. :... ... .::::...:..:.: : .: .. . .. ..:::
NP_001 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG
50 60 70 80 90
150 160 170 180 190 200
pF1KE6 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRV
:.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::.. ...
NP_001 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
100 110 120 130 140 150
pF1KE6 KMGD
>>NP_001185498 (OMIM: 108745) V-type proton ATPase 16 kD (155 aa)
initn: 417 init1: 192 opt: 207 Z-score: 278.3 bits: 58.0 E(85289): 9.2e-09
Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (52-200:17-155)
30 40 50 60 70 80
pF1KE6 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV
.: . :. .:..:::.: .:..: . .:
NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV
10 20 30 40
90 100 110 120 130 140
pF1KE6 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG
:. :... ... .::::...:..:.: : .: .. . .. ..:::
NP_001 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG
50 60 70 80 90
150 160 170 180 190 200
pF1KE6 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRV
:.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::.. ...
NP_001 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
100 110 120 130 140 150
pF1KE6 KMGD
205 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:42:09 2016 done: Tue Nov 8 11:42:10 2016
Total Scan time: 4.040 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]