FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6275, 205 aa
  1>>>pF1KE6275 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1838+/-0.00104; mu= 13.5612+/- 0.061
 mean_var=60.7508+/-12.689, 0's: 0 Z-trim(103.1): 30  B-trim: 0 in 0/47
 Lambda= 0.164550
 statistics sampled from 7250 (7261) to 7250 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.223), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(32554)
CCDS505.1 ATP6V0B gene_id:533|Hs108|chr1           ( 205) 1339 326.5 7.3e-90
CCDS72772.1 ATP6V0B gene_id:533|Hs108|chr1         ( 261) 1288 314.4 3.9e-86
CCDS41315.1 ATP6V0B gene_id:533|Hs108|chr1         ( 158) 1013 249.0 1.2e-66


>>CCDS505.1 ATP6V0B gene_id:533|Hs108|chr1                (205 aa)
 initn: 1339 init1: 1339 opt: 1339  Z-score: 1726.8  bits: 326.5 E(32554): 7.3e-90
Smith-Waterman score: 1339; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
              130       140       150       160       170       180

              190       200     
pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD
       :::::::::::::::::::::::::
CCDS50 IFGSAIGLFGVIVAILQTSRVKMGD
              190       200     

>>CCDS72772.1 ATP6V0B gene_id:533|Hs108|chr1              (261 aa)
 initn: 1288 init1: 1288 opt: 1288  Z-score: 1659.8  bits: 314.4 E(32554): 3.9e-86
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE6 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
              130       140       150       160       170       180

              190       200                                        
pF1KE6 IFGSAIGLFGVIVAILQTSRVKMGD                                   
       :::::::::::::::::                                           
CCDS72 IFGSAIGLFGVIVAILQVMNPLGKPLCPCPQPSLTLLLEKLKCSPSLPITIDSPKQLPPP
              190       200       210       220       230       240

>>CCDS41315.1 ATP6V0B gene_id:533|Hs108|chr1              (158 aa)
 initn: 1013 init1: 1013 opt: 1013  Z-score: 1310.3  bits: 249.0 E(32554): 1.2e-66
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 158 aa overlap (48-205:1-158)

        20        30        40        50        60        70       
pF1KE6 CALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSII
                                     ::::::::::::::::::::::::::::::
CCDS41                               MWSNLGIGLAISLSVVGAAWGIYITGSSII
                                             10        20        30

        80        90       100       110       120       130       
pF1KE6 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSM
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KE6 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ
              100       110       120       130       140       150

       200     
pF1KE6 TSRVKMGD
       ::::::::
CCDS41 TSRVKMGD
               




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:42:08 2016 done: Tue Nov  8 11:42:09 2016
 Total Scan time:  1.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]