Result of FASTA (ccds) for
pFN21AE6274
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6274, 190 aa
1>>>pF1KE6274 190 - 190 aa - 190 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0969+/-0.0006; mu= 14.0453+/- 0.036
mean_var=55.7160+/-11.072, 0's: 0 Z-trim(110.5): 17 B-trim: 5 in 1/50
Lambda= 0.171824
statistics sampled from 11649 (11662) to 11649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.358), width: 16
Scan time: 1.560
The best scores are: opt bits E(32554)
CCDS11746.1 CYGB gene_id:114757|Hs108|chr17 ( 190) 1253 317.9 2.3e-87
CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 ( 147) 253 70.0 7.6e-13
CCDS13917.1 MB gene_id:4151|Hs108|chr22 ( 154) 251 69.5 1.1e-12
CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 ( 147) 245 68.0 3e-12
CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 ( 147) 243 67.5 4.3e-12
>>CCDS11746.1 CYGB gene_id:114757|Hs108|chr17 (190 aa)
initn: 1253 init1: 1253 opt: 1253 Z-score: 1682.0 bits: 317.9 E(32554): 2.3e-87
Smith-Waterman score: 1253; 99.5% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS11 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
130 140 150 160 170 180
190
pF1KE6 PPATLPSSGP
::::::::::
CCDS11 PPATLPSSGP
190
>>CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 (147 aa)
initn: 116 init1: 102 opt: 253 Z-score: 344.1 bits: 70.0 E(32554): 7.6e-13
Smith-Waterman score: 253; 27.2% identity (71.3% similar) in 136 aa overlap (19-154:4-134)
10 20 30 40 50 60
pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF
.. :. :: ..:... . :..: : :..: .: ....:
CCDS77 MVHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFF
10 20 30 40
70 80 90 100 110 120
pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
..: .. .: . .:... :. .:. ... ...:. :... ..: ... : : .:.
CCDS77 DSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNM---DNLKPAFAKLSELHCDKLHVD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
: ::.:..:.. ..: .:...: ::.: :: ::
CCDS77 PENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH
110 120 130 140
190
pF1KE6 PPATLPSSGP
>>CCDS13917.1 MB gene_id:4151|Hs108|chr22 (154 aa)
initn: 238 init1: 126 opt: 251 Z-score: 341.1 bits: 69.5 E(32554): 1.1e-12
Smith-Waterman score: 251; 29.4% identity (63.4% similar) in 153 aa overlap (19-171:3-152)
10 20 30 40 50 60
pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF
::..: . : .:... :. : .:.:.: . : . . :
CCDS13 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
10 20 30 40
70 80 90 100 110 120
pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
..:::... ::. : .:.::. :. ::. .... . . :: ..:: :::.
CCDS13 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
:....: :..:. . .:: ..: : : :. . ... :::.:.
CCDS13 VKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
110 120 130 140 150
190
pF1KE6 PPATLPSSGP
>>CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 (147 aa)
initn: 111 init1: 97 opt: 245 Z-score: 333.3 bits: 68.0 E(32554): 3e-12
Smith-Waterman score: 245; 25.0% identity (69.6% similar) in 148 aa overlap (19-166:4-146)
10 20 30 40 50 60
pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF
..: .. .. ..:... . ::.: : :..: .: ....:
CCDS77 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFF
10 20 30 40
70 80 90 100 110 120
pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
..: .. . . .:... :. .:. .:. ....: : .....: ... : : .:.
CCDS77 DSFGNLSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDD---LKGTFAQLSELHCDKLHVD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
: ::.:..:.. :.: .:...: ::.: .: :. . : ... :
CCDS77 PENFKLLGNVLVTVLAIHFGKEFTPEVQASWQKMVTGVASALSSRYH
110 120 130 140
190
pF1KE6 PPATLPSSGP
>>CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 (147 aa)
initn: 118 init1: 97 opt: 243 Z-score: 330.7 bits: 67.5 E(32554): 4.3e-12
Smith-Waterman score: 243; 25.0% identity (69.6% similar) in 148 aa overlap (19-166:4-146)
10 20 30 40 50 60
pF1KE6 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYASCEDVGVAILVRFFVNFPSAKQYF
..: .. .. ..:... . ::.: : :..: .: ....:
CCDS77 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFF
10 20 30 40
70 80 90 100 110 120
pF1KE6 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVE
..: .. . . .:... :. .:. .:. ....: : .....: ... : : .:.
CCDS77 DSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDD---LKGTFAQLSELHCDKLHVD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 PVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATT
: ::.:..:.. :.: .:...: ::.: .: :. . : ... :
CCDS77 PENFKLLGNVLVTVLAIHFGKEFTPEVQASWQKMVTAVASALSSRYH
110 120 130 140
190
pF1KE6 PPATLPSSGP
190 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:41:29 2016 done: Tue Nov 8 11:41:29 2016
Total Scan time: 1.560 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]