Result of FASTA (omim) for
pFN21AE6272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6272, 182 aa
1>>>pF1KE6272 182 - 182 aa - 182 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1323+/-0.000354; mu= 13.9092+/- 0.022
mean_var=63.3826+/-12.318, 0's: 0 Z-trim(113.2): 36 B-trim: 231 in 2/56
Lambda= 0.161098
statistics sampled from 22389 (22422) to 22389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.263), width: 16
Scan time: 3.530
The best scores are: opt bits E(85289)
NP_000064 (OMIM: 186740,615607) T-cell surface gly ( 182) 1211 289.8 1.6e-78
XP_006719004 (OMIM: 186740,615607) PREDICTED: T-ce ( 182) 1211 289.8 1.6e-78
XP_005271781 (OMIM: 186740,615607) PREDICTED: T-ce ( 186) 968 233.3 1.7e-61
XP_016874032 (OMIM: 186790,615617) PREDICTED: T-ce ( 171) 428 107.8 9.4e-24
NP_000723 (OMIM: 186790,615617) T-cell surface gly ( 171) 428 107.8 9.4e-24
NP_001035741 (OMIM: 186790,615617) T-cell surface ( 127) 161 45.7 3.5e-05
>>NP_000064 (OMIM: 186740,615607) T-cell surface glycopr (182 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1530.5 bits: 289.8 E(85289): 1.6e-78
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
130 140 150 160 170 180
pF1KE6 RN
::
NP_000 RN
>>XP_006719004 (OMIM: 186740,615607) PREDICTED: T-cell s (182 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1530.5 bits: 289.8 E(85289): 1.6e-78
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
130 140 150 160 170 180
pF1KE6 RN
::
XP_006 RN
>>XP_005271781 (OMIM: 186740,615607) PREDICTED: T-cell s (186 aa)
initn: 965 init1: 965 opt: 968 Z-score: 1225.1 bits: 233.3 E(85289): 1.7e-61
Smith-Waterman score: 968; 92.1% identity (95.7% similar) in 164 aa overlap (1-164:1-160)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
::::::::::::::::::::::::::. :. :: :. .. :.
XP_005 AEIVSIFVLAVGVYFIAGQDGVRQSRG--KRMLL--DERWDHLRPSAFLLPLCTQWKRLS
130 140 150 160 170
pF1KE6 RN
XP_005 WCFLLVCIVG
180
>>XP_016874032 (OMIM: 186790,615617) PREDICTED: T-cell s (171 aa)
initn: 410 init1: 323 opt: 428 Z-score: 547.4 bits: 107.8 E(85289): 9.4e-24
Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::.. :. :.:: .: : .. .: . . . :: :...:.. .::: .
XP_016 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG--
10 20 30 40
70 80 90 100 110
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG
.: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..:
XP_016 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN
.. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: ::
XP_016 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN
110 120 130 140 150 160
180
pF1KE6 QLRRN
:
XP_016 WARNK
170
>>NP_000723 (OMIM: 186790,615617) T-cell surface glycopr (171 aa)
initn: 410 init1: 323 opt: 428 Z-score: 547.4 bits: 107.8 E(85289): 9.4e-24
Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::.. :. :.:: .: : .. .: . . . :: :...:.. .::: .
NP_000 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG--
10 20 30 40
70 80 90 100 110
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG
.: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..:
NP_000 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN
.. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: ::
NP_000 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN
110 120 130 140 150 160
180
pF1KE6 QLRRN
:
NP_000 WARNK
170
>>NP_001035741 (OMIM: 186790,615617) T-cell surface glyc (127 aa)
initn: 261 init1: 138 opt: 161 Z-score: 213.9 bits: 45.7 E(85289): 3.5e-05
Smith-Waterman score: 194; 30.1% identity (50.3% similar) in 183 aa overlap (1-180:1-125)
10 20 30 40 50 60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
::.. :. :.:: .: : .. .: . . . :: :...:.. .::: .
NP_001 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG--
10 20 30 40
70 80 90 100 110
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG
.: : : . .::. ::::.:.:.:. ..: . .::.::
NP_001 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYR---------------
50 60 70 80 90
120 130 140 150 160 170
pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN
..: :.:: :::.::::.::.: ::::: ::
NP_001 -----------------------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGN
100 110 120
180
pF1KE6 QLRRN
:
NP_001 WARNK
182 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:40:27 2016 done: Tue Nov 8 11:40:27 2016
Total Scan time: 3.530 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]