FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6272, 182 aa
  1>>>pF1KE6272 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8586+/-0.000788; mu= 15.5148+/- 0.047
 mean_var=61.8039+/-12.151, 0's: 0 Z-trim(106.5): 24  B-trim: 7 in 1/51
 Lambda= 0.163142
 statistics sampled from 8996 (9009) to 8996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.277), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS8395.1 CD3G gene_id:917|Hs108|chr11            ( 182) 1211 293.1 6.2e-80
CCDS8394.1 CD3D gene_id:915|Hs108|chr11            ( 171)  428 108.8 1.8e-24


>>CCDS8395.1 CD3G gene_id:917|Hs108|chr11                 (182 aa)
 initn: 1211 init1: 1211 opt: 1211  Z-score: 1548.5  bits: 293.1 E(32554): 6.2e-80
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR
              130       140       150       160       170       180

         
pF1KE6 RN
       ::
CCDS83 RN
         

>>CCDS8394.1 CD3D gene_id:915|Hs108|chr11                 (171 aa)
 initn: 410 init1: 323 opt: 428  Z-score: 552.9  bits: 108.8 E(32554): 1.8e-24
Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169)

               10        20        30        40        50        60
pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
       ::..  :. :.:: .: :   .. .:    . . .  ::  :...:..   .::: .   
CCDS83 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG--
               10           20             30            40        

               70        80        90          100       110       
pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG
        .: :  :  . .::.   ::::.:.:.:.   ..: . .::.:::::.:.::. ::..:
CCDS83 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG
         50        60        70        80        90       100      

       120       130       140       150       160       170       
pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN
       .. ..... ..::.::. .::..  : : :.: :.:: :::.::::.::.: ::::: ::
CCDS83 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN
        110       120       130       140       150       160      

       180  
pF1KE6 QLRRN
         :  
CCDS83 WARNK
        170 




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:40:26 2016 done: Tue Nov  8 11:40:27 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]