Result of FASTA (ccds) for
pFN21AE6270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6270, 192 aa
1>>>pF1KE6270 192 - 192 aa - 192 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1226+/-0.000957; mu= 13.5012+/- 0.057
mean_var=54.6126+/-10.924, 0's: 0 Z-trim(103.3): 19 B-trim: 0 in 0/50
Lambda= 0.173551
statistics sampled from 7332 (7342) to 7332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.226), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 ( 192) 1258 323.0 7e-89
CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 ( 161) 1032 266.4 6.5e-72
CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 ( 179) 985 254.6 2.5e-68
CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 ( 153) 870 225.8 1e-59
CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 ( 164) 821 213.6 5.3e-56
CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 ( 185) 813 211.6 2.3e-55
CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 ( 129) 424 114.1 3.6e-26
>>CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 (192 aa)
initn: 1258 init1: 1258 opt: 1258 Z-score: 1709.2 bits: 323.0 E(32554): 7e-89
Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
130 140 150 160 170 180
190
pF1KE6 VMGAYVLLKRES
::::::::::::
CCDS11 VMGAYVLLKRES
190
>>CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 (161 aa)
initn: 1051 init1: 1032 opt: 1032 Z-score: 1404.6 bits: 266.4 E(32554): 6.5e-72
Smith-Waterman score: 1032; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
::::::::::::::::::::::::::::::::::::.:
CCDS77 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGMLFWL
130 140 150 160
190
pF1KE6 VMGAYVLLKRES
>>CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 (179 aa)
initn: 985 init1: 985 opt: 985 Z-score: 1340.3 bits: 254.6 E(32554): 2.5e-68
Smith-Waterman score: 985; 80.7% identity (96.0% similar) in 176 aa overlap (16-191:4-179)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS45 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
10 20 30 40
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.::
CCDS45 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
:::::::::: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.:
CCDS45 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF
110 120 130 140 150 160
190
pF1KE6 VMGAYVLLKRES
..: .::..::
CCDS45 LLGLFVLVHRE
170
>>CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 (153 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1185.7 bits: 225.8 E(32554): 1e-59
Smith-Waterman score: 870; 82.4% identity (96.1% similar) in 153 aa overlap (39-191:1-153)
10 20 30 40 50 60
pF1KE6 AHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGS
:::::::::::::.:.::::::::::::::
CCDS61 MIVSSALMIWKGLMVITGSESPIVVVLSGS
10 20 30
70 80 90 100 110 120
pF1KE6 MEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGD
::::::::::::::: :::::.::::::..:::.:::::::.:.:::.:: ::::::::
CCDS61 MEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 NNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLL
:: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.: ..: .::.
CCDS61 NNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLV
100 110 120 130 140 150
190
pF1KE6 KRES
.::
CCDS61 HRE
>>CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 (164 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1118.9 bits: 213.6 E(32554): 5.3e-56
Smith-Waterman score: 821; 84.5% identity (96.5% similar) in 142 aa overlap (16-157:4-145)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
10 20 30 40
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.::
CCDS61 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
:::::::::: ::::::::.::.::::::::::::::
CCDS61 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFYQENSSVEDRNYLFLILEL
110 120 130 140 150 160
190
pF1KE6 VMGAYVLLKRES
>>CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 (185 aa)
initn: 813 init1: 813 opt: 813 Z-score: 1107.3 bits: 211.6 E(32554): 2.3e-55
Smith-Waterman score: 813; 84.4% identity (96.5% similar) in 141 aa overlap (16-156:4-144)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
10 20 30 40
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.::
CCDS61 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
:::::::::: ::::::::.::.:::::::::::::
CCDS61 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGMQFSFCWVYSCWFIVSKKPALLFL
110 120 130 140 150 160
190
pF1KE6 VMGAYVLLKRES
CCDS61 GRCHSFRYWMFGVDTGL
170 180
>>CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 (129 aa)
initn: 674 init1: 417 opt: 424 Z-score: 583.4 bits: 114.1 E(32554): 3.6e-26
Smith-Waterman score: 578; 56.2% identity (68.8% similar) in 176 aa overlap (16-191:4-129)
10 20 30 40 50 60
pF1KE6 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS73 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
10 20 30 40
70 80 90 100 110 120
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
::::: ..::
CCDS73 IVVVL--------------------------------------------------RQNGH
50
130 140 150 160 170 180
pF1KE6 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
:::::::::: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.:
CCDS73 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF
60 70 80 90 100 110
190
pF1KE6 VMGAYVLLKRES
..: .::..::
CCDS73 LLGLFVLVHRE
120
192 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:39:25 2016 done: Tue Nov 8 11:39:25 2016
Total Scan time: 1.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]