FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6263, 188 aa
  1>>>pF1KE6263 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9785+/-0.000318; mu= 14.7828+/- 0.020
 mean_var=66.6626+/-13.268, 0's: 0 Z-trim(116.4): 3  B-trim: 0 in 0/53
 Lambda= 0.157084
 statistics sampled from 27575 (27578) to 27575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.323), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(85289)
NP_061974 (OMIM: 606907) apolipoprotein M isoform  ( 188) 1301 303.2 1.7e-82
NP_001243098 (OMIM: 606907) apolipoprotein M isofo ( 116)  801 189.7 1.5e-48
XP_006715213 (OMIM: 606907) PREDICTED: apolipoprot ( 156)  686 163.7 1.3e-40


>>NP_061974 (OMIM: 606907) apolipoprotein M isoform 1 [H  (188 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1602.2  bits: 303.2 E(85289): 1.7e-82
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE6 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
              130       140       150       160       170       180

               
pF1KE6 EACELSNN
       ::::::::
NP_061 EACELSNN
               

>>NP_001243098 (OMIM: 606907) apolipoprotein M isoform 2  (116 aa)
 initn: 801 init1: 801 opt: 801  Z-score: 992.8  bits: 189.7 E(85289): 1.5e-48
Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 116 aa overlap (73-188:1-116)

             50        60        70        80        90       100  
pF1KE6 HLGQWYFIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIY
                                     ::::::::::::::::::::::::::::::
NP_001                               MAAGSAPMQLHLRATIRMKDGLCVPRKWIY
                                             10        20        30

            110       120       130       140       150       160  
pF1KE6 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK
               40        50        60        70        80        90

            170       180        
pF1KE6 SLTSCLDSKAFLLTPRNQEACELSNN
       ::::::::::::::::::::::::::
NP_001 SLTSCLDSKAFLLTPRNQEACELSNN
              100       110      

>>XP_006715213 (OMIM: 606907) PREDICTED: apolipoprotein   (156 aa)
 initn: 686 init1: 686 opt: 686  Z-score: 850.1  bits: 163.7 E(85289): 1.3e-40
Smith-Waterman score: 686; 100.0% identity (100.0% similar) in 98 aa overlap (91-188:59-156)

               70        80        90       100       110       120
pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
                                     ::::::::::::::::::::::::::::::
XP_006 LTLWTTLSSIWLLALPRCSSTFVLPSACEWKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
       30        40        50        60        70        80        

              130       140       150       160       170       180
pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
       90       100       110       120       130       140        

               
pF1KE6 EACELSNN
       ::::::::
XP_006 EACELSNN
      150      




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:35:44 2016 done: Tue Nov  8 11:35:45 2016
 Total Scan time:  4.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]