FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6259, 241 aa
  1>>>pF1KE6259 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5130+/-0.000779; mu= 13.1661+/- 0.046
 mean_var=62.1990+/-12.240, 0's: 0 Z-trim(106.8): 10  B-trim: 6 in 1/49
 Lambda= 0.162623
 statistics sampled from 9192 (9197) to 9192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11        ( 241) 1569 376.4 9.2e-105
CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12         ( 281)  391 100.1 1.7e-21


>>CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11             (241 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 1994.3  bits: 376.4 E(32554): 9.2e-105
Smith-Waterman score: 1569; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE6 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE
              190       200       210       220       230       240

        
pF1KE6 A
       :
CCDS31 A
        

>>CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12              (281 aa)
 initn: 494 init1: 287 opt: 391  Z-score: 499.5  bits: 100.1 E(32554): 1.7e-21
Smith-Waterman score: 507; 42.2% identity (70.6% similar) in 218 aa overlap (13-228:69-273)

                                 10        20        30        40  
pF1KE6                   MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSAD
                                     .:...:. : : ::::.:::.::.::::::
CCDS85 PSSPWPTPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSAD
       40        50        60        70        80        90        

             50        60        70        80        90       100  
pF1KE6 LLPLDGLKKLGSSKDMQPHNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKS
       :::::.::.::.:::.::....::::.: : . :.. :  :   . . : ... :. .:.
CCDS85 LLPLDSLKRLGTSKDLQPRSVIQRRLVEGNPNWLQGEP--P---RMQDLIHGQ-ESRRKT
      100       110       120       130            140        150  

              110       120       130       140       150       160
pF1KE6 EEDDM--ILVSCQCAGKDVKALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPR
        . ..  .::.:.:  . ... ::::  :: :: .:..::::...: . .  :.    : 
CCDS85 SRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKAS-AGDLAPGPP
            160       170       180       190       200        210 

              170       180       190       200       210       220
pF1KE6 HLKVVGQIEHLVITLGSLRLDCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKT
             :.:.: . ::.  . : : ::: .  .. :::::: :::: :.:. : ..  :.
CCDS85 T-----QVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLE-HGVLRLKA
                  220       230       240       250        260     

              230       240 
pF1KE6 DKEEIPFVETVSLNEDNTSEA
          :.::.             
CCDS85 PFSELPFLPLYQEPGQ     
         270       280      




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:33:40 2016 done: Tue Nov  8 11:33:40 2016
 Total Scan time:  2.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]