FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6252, 221 aa
  1>>>pF1KE6252 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6374+/-0.0007; mu= 5.4801+/- 0.042
 mean_var=172.8071+/-33.516, 0's: 0 Z-trim(116.7): 23  B-trim: 0 in 0/53
 Lambda= 0.097565
 statistics sampled from 17329 (17345) to 17329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.533), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS5440.1 RP9 gene_id:6100|Hs108|chr7             ( 221) 1527 225.7 1.8e-59


>>CCDS5440.1 RP9 gene_id:6100|Hs108|chr7                  (221 aa)
 initn: 1527 init1: 1527 opt: 1527  Z-score: 1181.0  bits: 225.7 E(32554): 1.8e-59
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE6 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE
              130       140       150       160       170       180

              190       200       210       220 
pF1KE6 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE
       :::::::::::::::::::::::::::::::::::::::::
CCDS54 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE
              190       200       210       220 




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:28:58 2016 done: Tue Nov  8 11:28:58 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]