FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6240, 195 aa
  1>>>pF1KE6240 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1520+/-0.000508; mu= 14.8814+/- 0.031
 mean_var=66.0057+/-13.182, 0's: 0 Z-trim(114.7): 8  B-trim: 9 in 1/51
 Lambda= 0.157864
 statistics sampled from 15233 (15239) to 15233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.468), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS14576.1 PGRMC1 gene_id:10857|Hs108|chrX        ( 195) 1314 306.8 5.3e-84
CCDS65313.1 PGRMC1 gene_id:10857|Hs108|chrX        ( 143)  744 176.9   5e-45
CCDS3739.2 PGRMC2 gene_id:10424|Hs108|chr4         ( 247)  664 158.9 2.4e-39
CCDS11044.1 CYB5D2 gene_id:124936|Hs108|chr17      ( 264)  252 65.0 4.4e-11


>>CCDS14576.1 PGRMC1 gene_id:10857|Hs108|chrX             (195 aa)
 initn: 1314 init1: 1314 opt: 1314  Z-score: 1621.5  bits: 306.8 E(32554): 5.3e-84
Smith-Waterman score: 1314; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY
              130       140       150       160       170       180

              190     
pF1KE6 SDEEEPKDESARKND
       :::::::::::::::
CCDS14 SDEEEPKDESARKND
              190     

>>CCDS65313.1 PGRMC1 gene_id:10857|Hs108|chrX             (143 aa)
 initn: 944 init1: 736 opt: 744  Z-score: 921.9  bits: 176.9 E(32554): 5e-45
Smith-Waterman score: 843; 72.8% identity (72.8% similar) in 195 aa overlap (1-195:1-143)

               10        20        30        40        50        60
pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS65 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGP-----------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY
                                                 ::::::::::::::::::
CCDS65 -----------------------------------------VKYHHVGKLLKEGEEPTVY
                                              110       120        

              190     
pF1KE6 SDEEEPKDESARKND
       :::::::::::::::
CCDS65 SDEEEPKDESARKND
      130       140   

>>CCDS3739.2 PGRMC2 gene_id:10424|Hs108|chr4              (247 aa)
 initn: 636 init1: 636 opt: 664  Z-score: 820.0  bits: 158.9 E(32554): 2.4e-39
Smith-Waterman score: 664; 59.4% identity (82.4% similar) in 165 aa overlap (30-190:80-244)

                10        20        30        40          50       
pF1KE6  MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKI-VR-GDQPAASGDS
                                     ::. :..: ..  :.. :: : .  ..: .
CCDS37 ESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYRLWVRWGRRGLGAGAG
      50        60        70        80        90       100         

        60          70        80        90       100       110     
pF1KE6 DDDEPPP--LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGV
         .: :   :::.:.:::.  .::..:: ..::::.:.:::::::::: ::::: ::::.
CCDS37 AGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPAGPYGI
     110       120       130       140       150       160         

         120       130       140       150       160       170     
pF1KE6 FAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGE
       :::::::::::::::::.::.:::::::::.:.:.:.. .:: ::  :: .::.::: ::
CCDS37 FAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGE
     170       180       190       200       210       220         

         180       190     
pF1KE6 EPTVYSDEEEPKDESARKND
       ::. :.:::. ::..     
CCDS37 EPSEYTDEEDTKDHNKQD  
     230       240         

>>CCDS11044.1 CYB5D2 gene_id:124936|Hs108|chr17           (264 aa)
 initn: 298 init1: 166 opt: 252  Z-score: 312.4  bits: 65.0 E(32554): 4.4e-11
Smith-Waterman score: 252; 42.5% identity (67.0% similar) in 106 aa overlap (66-170:31-133)

          40        50        60        70        80         90    
pF1KE6 GLCIFLLYKIVRGDQPAASGDSDDDEPPPLPRLKRRDFTPAELRRF-DGVQDPRILMAIN
                                     ::   : : : :: :.  :  :: . .:. 
CCDS11 MLRCGGRGLLLGLAVAAAAVMAARLMGWWGPRAGFRLFIPEELSRYRGGPGDPGLYLALL
               10        20        30        40        50        60

          100       110       120       130       140       150    
pF1KE6 GKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLS
       :.:.::..::. : : . :. ::::::::...:   .. .:    ::.:::.::.. :: 
CCDS11 GRVYDVSSGRRHYEPGSHYSGFAGRDASRAFVTGDCSEAGL---VDDVSDLSAAEMLTLH
               70        80        90       100          110       

          160       170       180       190                        
pF1KE6 DWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDESARKND                   
       .: : .  .:  ::..                                            
CCDS11 NWLSFYEKNYVCVGRVTGRFYGEDGLPTPALTQVEAAITRGLEANKLQLQEKQTFPPCNA
       120       130       140       150       160       170       




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:22:19 2016 done: Tue Nov  8 11:22:19 2016
 Total Scan time:  1.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]