FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6238, 303 aa
  1>>>pF1KE6238 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3637+/-0.00081; mu= 14.7258+/- 0.049
 mean_var=63.0986+/-13.114, 0's: 0 Z-trim(107.5): 47  B-trim: 480 in 1/48
 Lambda= 0.161460
 statistics sampled from 9577 (9622) to 9577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.296), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS7943.1 MTCH2 gene_id:23788|Hs108|chr11         ( 303) 2043 484.4 4.5e-137
CCDS4828.1 MTCH1 gene_id:23787|Hs108|chr6          ( 372) 1025 247.3 1.3e-65
CCDS64411.1 MTCH1 gene_id:23787|Hs108|chr6         ( 389)  714 174.9 8.7e-44


>>CCDS7943.1 MTCH2 gene_id:23788|Hs108|chr11              (303 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 2574.3  bits: 484.4 E(32554): 4.5e-137
Smith-Waterman score: 2043; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KE6 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFSYAQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFSYAQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IKETTREMIARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIITIYREEGILGFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IKETTREMIARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIITIYREEGILGFFA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLK
              250       260       270       280       290       300

          
pF1KE6 MLI
       :::
CCDS79 MLI
          

>>CCDS4828.1 MTCH1 gene_id:23787|Hs108|chr6               (372 aa)
 initn: 1010 init1: 678 opt: 1025  Z-score: 1291.4  bits: 247.3 E(32554): 1.3e-65
Smith-Waterman score: 1025; 49.7% identity (82.3% similar) in 288 aa overlap (8-295:86-369)

                                      10        20        30       
pF1KE6                        MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPP
                                     : ::.:.: ::.::.:::.:::::.::.::
CCDS48 PAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPP
          60        70        80        90       100       110     

        40        50        60        70        80        90       
pF1KE6 TIGRNIFGRQVCQLPGLFSYAQHIASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQE
       :.: :..::.:  ::..:.::..:...::. ::: ::.::: :..:.::..:.. . .  
CCDS48 TLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPP
         120       130       140       150       160       170     

       100       110       120       130       140       150       
pF1KE6 SDKGEELGPGNVQKEVSSSFDHVIKETTREMIARSAATLITHPFHVITLRSMVQFIGRES
        :. :...    . ....:. .:.:::. ::. . .. ...::.:::..: ::::.:::.
CCDS48 -DEIEQVSN---KDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREA
          180          190       200       210       220       230 

       160       170       180       190       200       210       
pF1KE6 KYCGLCDSIITIYREEGILGFFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNE
       :: :. .::  :..:::.::::.::.:.::::.. :: :: ::...:.: .:.. :    
CCDS48 KYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSFSQALA
             240       250       260       270       280       290 

       220       230       240       250       260       270       
pF1KE6 MKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGN
       ..::.. : :. .:::::::.::..::::::::: .: :::::.. ::: :: .:. .:.
CCDS48 IRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNCGLQAGLPPYSPVFKSWIHCWKYLSVQGQ
             300       310       320       330       340       350 

       280       290       300   
pF1KE6 MSRGNSLFFRKVPFGKTYCCDLKMLI
       . ::.::.::.:  :. .        
CCDS48 LFRGSSLLFRRVSSGSCFALE     
             360       370       

>>CCDS64411.1 MTCH1 gene_id:23787|Hs108|chr6              (389 aa)
 initn: 1024 init1: 387 opt: 714  Z-score: 899.5  bits: 174.9 E(32554): 8.7e-44
Smith-Waterman score: 991; 47.5% identity (78.7% similar) in 305 aa overlap (8-295:86-386)

                                      10        20        30       
pF1KE6                        MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPP
                                     : ::.:.: ::.::.:::.:::::.::.::
CCDS64 PAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPP
          60        70        80        90       100       110     

        40        50        60        70        80        90       
pF1KE6 TIGRNIFGRQVCQLPGLFSYAQHIASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQE
       :.: :..::.:  ::..:.::..:...::. ::: ::.::: :..:.::..:.. . .  
CCDS64 TLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPP
         120       130       140       150       160       170     

       100       110       120       130       140       150       
pF1KE6 SDKGEELGPGNVQKEVSSSFDHVIKETTREMIARSAATLITHPFHVITLRSMVQFIGRES
        :. :...    . ....:. .:.:::. ::. . .. ...::.:::..: ::::.:::.
CCDS64 -DEIEQVSN---KDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREA
          180          190       200       210       220       230 

       160       170       180       190       200       210       
pF1KE6 KYCGLCDSIITIYREEGILGFFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTM--
       :: :. .::  :..:::.::::.::.:.::::.. :: :: ::...:.: .:..::    
CCDS64 KYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSVSDTPG
             240       250       260       270       280       290 

                        220       230       240       250       260
pF1KE6 ---NE------------MKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGCPPYSP
          :.            ..::.. : :. .:::::::.::..::::::::: .: :::::
CCDS64 GLGNDQNPGSQFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNCGLQAGLPPYSP
             300       310       320       330       340       350 

              270       280       290       300   
pF1KE6 IYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLKMLI
       .. ::: :: .:. .:.. ::.::.::.:  :. .        
CCDS64 VFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE     
             360       370       380              




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:21:22 2016 done: Tue Nov  8 11:21:22 2016
 Total Scan time:  2.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]