Result of FASTA (ccds) for
pFN21AE6229
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6229, 193 aa
1>>>pF1KE6229 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0587+/-0.000884; mu= 14.1328+/- 0.053
mean_var=54.0930+/-11.027, 0's: 0 Z-trim(103.8): 29 B-trim: 5 in 1/51
Lambda= 0.174383
statistics sampled from 7587 (7609) to 7587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.234), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS4123.1 AP3S1 gene_id:1176|Hs108|chr5 ( 193) 1260 324.9 2e-89
CCDS10357.1 AP3S2 gene_id:10239|Hs108|chr15 ( 193) 1089 281.8 1.8e-76
CCDS83021.1 AP3S1 gene_id:1176|Hs108|chr5 ( 162) 994 257.9 2.3e-69
CCDS55977.1 AP3S2 gene_id:100526783|Hs108|chr15 ( 394) 966 251.0 6.8e-67
CCDS33062.1 AP2S1 gene_id:1175|Hs108|chr19 ( 142) 365 99.6 9.1e-22
CCDS77323.1 AP2S1 gene_id:1175|Hs108|chr19 ( 156) 359 98.1 2.8e-21
CCDS77322.1 AP2S1 gene_id:1175|Hs108|chr19 ( 144) 358 97.9 3.1e-21
CCDS77321.1 AP2S1 gene_id:1175|Hs108|chr19 ( 158) 358 97.9 3.4e-21
CCDS75958.1 AP1S2 gene_id:8905|Hs108|chrX ( 160) 348 95.4 2e-20
CCDS14173.1 AP1S2 gene_id:8905|Hs108|chrX ( 157) 344 94.4 3.9e-20
CCDS47669.1 AP1S1 gene_id:1174|Hs108|chr7 ( 158) 343 94.1 4.6e-20
CCDS45093.1 AP4S1 gene_id:11154|Hs108|chr14 ( 144) 336 92.3 1.4e-19
CCDS42827.1 AP1S3 gene_id:130340|Hs108|chr2 ( 154) 321 88.6 2.1e-18
CCDS58309.1 AP4S1 gene_id:11154|Hs108|chr14 ( 149) 233 66.4 9.4e-12
CCDS9642.1 AP4S1 gene_id:11154|Hs108|chr14 ( 159) 233 66.4 9.9e-12
>>CCDS4123.1 AP3S1 gene_id:1176|Hs108|chr5 (193 aa)
initn: 1260 init1: 1260 opt: 1260 Z-score: 1719.1 bits: 324.9 E(32554): 2e-89
Smith-Waterman score: 1260; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
130 140 150 160 170 180
190
pF1KE6 DISIKVPNLPSFK
:::::::::::::
CCDS41 DISIKVPNLPSFK
190
>>CCDS10357.1 AP3S2 gene_id:10239|Hs108|chr15 (193 aa)
initn: 1107 init1: 1089 opt: 1089 Z-score: 1486.6 bits: 281.8 E(32554): 1.8e-76
Smith-Waterman score: 1089; 84.4% identity (94.8% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
::.:::.::::::::: .::: . :. ::::.::::::: :::.:.::::::: ::::::
CCDS10 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::: ::
CCDS10 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
:.:::::::::::::::.::.:::.:::::.::..:::::::::::.::::::::::::
CCDS10 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
130 140 150 160 170 180
190
pF1KE6 DISIKVPNLPSFK
:..:::::: .:
CCDS10 DLNIKVPNLSQFV
190
>>CCDS83021.1 AP3S1 gene_id:1176|Hs108|chr5 (162 aa)
initn: 990 init1: 990 opt: 994 Z-score: 1358.6 bits: 257.9 E(32554): 2.3e-69
Smith-Waterman score: 994; 96.2% identity (98.1% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
:::::::::::::::::::::::::::::::. . .:
CCDS83 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSETFIFQSPRQDR
130 140 150 160
190
pF1KE6 DISIKVPNLPSFK
>>CCDS55977.1 AP3S2 gene_id:100526783|Hs108|chr15 (394 aa)
initn: 975 init1: 957 opt: 966 Z-score: 1314.4 bits: 251.0 E(32554): 6.8e-67
Smith-Waterman score: 966; 84.3% identity (94.8% similar) in 172 aa overlap (21-192:222-393)
10 20 30 40 50
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFL
. . :. ::::.::::::: :::.:.::::
CCDS55 GASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWPEEIQQQIVRETFHLVLKRDDNICNFL
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE6 EGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLI
::: :::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLI
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE6 FHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNL
::.:::: :: :.:::::::::::::::.::.:::.:::::.::..:::::::::::.::
CCDS55 FHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINL
320 330 340 350 360 370
180 190
pF1KE6 PEIPRNINIGDISIKVPNLPSFK
:::::::::::..:::::: .:
CCDS55 PEIPRNINIGDLNIKVPNLSQFV
380 390
>>CCDS33062.1 AP2S1 gene_id:1175|Hs108|chr19 (142 aa)
initn: 380 init1: 257 opt: 365 Z-score: 504.3 bits: 99.6 E(32554): 9.1e-22
Smith-Waterman score: 365; 40.5% identity (73.6% similar) in 148 aa overlap (1-148:1-142)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
::. ::: : :: ::.:.:. ...: .:..:.:. .:. :: . ::.: .
CCDS33 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
:.:::.:: ::: .::: ....:. :. :. :::.:.. :.:::::::.:. ::....
CCDS33 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
:: ..: . ::...... :. ..::
CCDS33 DEMFLAGEIRETSQTKVLKQLLMLQSLE
120 130 140
>>CCDS77323.1 AP2S1 gene_id:1175|Hs108|chr19 (156 aa)
initn: 380 init1: 257 opt: 359 Z-score: 495.5 bits: 98.1 E(32554): 2.8e-21
Smith-Waterman score: 364; 40.1% identity (72.6% similar) in 157 aa overlap (1-148:1-156)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
::. ::: : :: ::.:.:. ...: .:..:.:. .:. :: . ::.: : :. .:
CCDS77 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEV-LAISVAD
10 20 30 40 50
70 80 90 100 110
pF1KE6 N---------KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIF
. :.:::.:: ::: .::: ....:. :. :. :::.:.. :.:::::::.:
CCDS77 SLSVLQFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 HVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLP
. ::.... :: ..: . ::...... :. ..::
CCDS77 NFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
120 130 140 150
180 190
pF1KE6 EIPRNINIGDISIKVPNLPSFK
>>CCDS77322.1 AP2S1 gene_id:1175|Hs108|chr19 (144 aa)
initn: 368 init1: 257 opt: 358 Z-score: 494.7 bits: 97.9 E(32554): 3.1e-21
Smith-Waterman score: 358; 40.1% identity (73.5% similar) in 147 aa overlap (2-148:4-144)
10 20 30 40 50
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGG
:. ::: : :: ::.:.:. ...: .:..:.:. .:. :: . ::.:
CCDS77 MVWIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN
. :.:::.:: ::: .::: ....:. :. :. :::.:.. :.:::::::.:. ::..
CCDS77 RNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 ILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNIN
.. :: ..: . ::...... :. ..::
CCDS77 VVDEMFLAGEIRETSQTKVLKQLLMLQSLE
120 130 140
>>CCDS77321.1 AP2S1 gene_id:1175|Hs108|chr19 (158 aa)
initn: 368 init1: 257 opt: 358 Z-score: 494.1 bits: 97.9 E(32554): 3.4e-21
Smith-Waterman score: 358; 40.1% identity (73.5% similar) in 147 aa overlap (2-148:18-158)
10 20 30 40
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDE
:. ::: : :: ::.:.:. ...: .:..:.:. .:. ::
CCDS77 MKLKGLGKRCKRREDLEIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 NVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENV
. ::.: . :.:::.:: ::: .::: ....:. :. :. :::.:.. :.::
CCDS77 KHTNFVEF------RNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNV
70 80 90 100 110
110 120 130 140 150 160
pF1KE6 CELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSA
:::::.:. ::.... :: ..: . ::...... :. ..::
CCDS77 CELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
120 130 140 150
170 180 190
pF1KE6 VKNMNLPEIPRNINIGDISIKVPNLPSFK
>>CCDS75958.1 AP1S2 gene_id:8905|Hs108|chrX (160 aa)
initn: 327 init1: 213 opt: 348 Z-score: 480.4 bits: 95.4 E(32554): 2e-20
Smith-Waterman score: 348; 37.9% identity (68.9% similar) in 161 aa overlap (2-162:1-153)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
.. .:.:. .:: ::.:.: : :. ...: :: . : : ..:.::: :
CCDS75 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RD
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
:..:..::.::: ......:: :..:. .:: ::: : .:::::.::. .:.. ::
CCDS75 LKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
:...:: : ::. .... :. : : . .: : .: :.:
CCDS75 DEFLLGGEVQETSKKNVLKAIE-QADLLQEDAKEAETP-RSVLEEIGLT
120 130 140 150 160
190
pF1KE6 DISIKVPNLPSFK
>>CCDS14173.1 AP1S2 gene_id:8905|Hs108|chrX (157 aa)
initn: 340 init1: 213 opt: 344 Z-score: 475.1 bits: 94.4 E(32554): 3.9e-20
Smith-Waterman score: 344; 38.4% identity (69.5% similar) in 151 aa overlap (2-152:1-144)
10 20 30 40 50 60
pF1KE6 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
.. .:.:. .:: ::.:.: : :. ...: :: . : : ..:.::: :
CCDS14 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLE------WRD
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
:..:..::.::: ......:: :..:. .:: ::: : .:::::.::. .:.. ::
CCDS14 LKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
:...:: : ::. .... :. : : . ::
CCDS14 DEFLLGGEVQETSKKNVLKAIE-QADLLQEEAETPRSVLEEIGLT
120 130 140 150
190
pF1KE6 DISIKVPNLPSFK
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:17:01 2016 done: Tue Nov 8 11:17:01 2016
Total Scan time: 1.700 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]