FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6223, 240 aa
  1>>>pF1KE6223 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0267+/-0.000759; mu= 15.5357+/- 0.046
 mean_var=61.8805+/-12.268, 0's: 0 Z-trim(107.6): 29  B-trim: 0 in 0/51
 Lambda= 0.163041
 statistics sampled from 9658 (9666) to 9658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS33617.1 GSTT2B gene_id:653689|Hs108|chr22      ( 244)  824 202.1 2.8e-52


>>CCDS33617.1 GSTT2B gene_id:653689|Hs108|chr22           (244 aa)
 initn: 809 init1: 522 opt: 824  Z-score: 1052.1  bits: 202.1 E(32554): 2.8e-52
Smith-Waterman score: 824; 53.8% identity (74.4% similar) in 238 aa overlap (1-232:1-237)

               10        20        30        40        50        60
pF1KE6 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDACAQVNPLKKVPALKDG
       :::::.:::.::: :::::::::: ::.::: :::.:::: :    :.: : :.:.::::
CCDS33 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMF
       :: :::: :::.::. ::..::.:::.:::::::: :::.:.   .: .    :: .:. 
CCDS33 DFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGA
       :. .:  :  . .  . . .: .:: :::::: .. ::.: ...::::.:. :::.::. 
CCDS33 PL-IGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVAL
               130       140       150       160       170         

              190       200       210             220       230    
pF1KE6 GCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKA------KDFPPADPTIKQKLMPW
       : ..:::::.::.:: :::: .: .: :::: .::.       : .:  .:   : ..  
CCDS33 GYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLR
     180       190       200       210       220       230         

          240
pF1KE6 VLAMIR
             
CCDS33 IARIP 
     240     




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:13:46 2016 done: Tue Nov  8 11:13:46 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]