FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6221, 301 aa
  1>>>pF1KE6221 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1896+/-0.000657; mu= 13.7709+/- 0.040
 mean_var=115.1749+/-23.069, 0's: 0 Z-trim(114.8): 4  B-trim: 0 in 0/52
 Lambda= 0.119508
 statistics sampled from 15380 (15383) to 15380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.473), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17          ( 301) 2077 368.0 4.8e-102
CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22          ( 266)  712 132.6 3.1e-31


>>CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17               (301 aa)
 initn: 2077 init1: 2077 opt: 2077  Z-score: 1945.4  bits: 368.0 E(32554): 4.8e-102
Smith-Waterman score: 2077; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE6 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK
              250       260       270       280       290       300

        
pF1KE6 S
       :
CCDS11 S
        

>>CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22               (266 aa)
 initn: 667 init1: 617 opt: 712  Z-score: 674.2  bits: 132.6 E(32554): 3.1e-31
Smith-Waterman score: 712; 44.1% identity (72.7% similar) in 227 aa overlap (76-298:36-262)

          50        60        70          80        90        100  
pF1KE6 ARQAEAWRASGRPGYCLGTRPLSTARPPPPW--SQKGPGDSTRPSKP-GPVSWKSLAITF
                                     :  :..::...   ..: ::     : :: 
CCDS14 RSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITG
          10        20        30        40        50        60     

            110       120       130        140       150       160 
pF1KE6 AIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLG-GPFSLTTHTGERKTDKDYLGQWLL
        .:..: ..   .. :: .  ...: . . .  .: : : :  : :. .   :. :::.:
CCDS14 LFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVL
          70        80        90       100       110       120     

             170       180       190       200       210       220 
pF1KE6 IYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS
       .:::::::::.::.::::..::: ....   :: . :.::..:::::  ::.: ::..: 
CCDS14 MYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFH
         130       140       150       160       170       180     

             230       240       250       260       270       280 
pF1KE6 PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK
       :.:.::::. ..: :....:::::. ::::::.::::::.: .::..::: : ::.:...
CCDS14 PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR
         190       200       210       220       230       240     

             290       300  
pF1KE6 RKGEIAASIATHMRPYRKKS 
          .:. :.  ::  .:    
CCDS14 SAEQISDSVRRHMAAFRSVLS
         250       260      




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:12:47 2016 done: Tue Nov  8 11:12:47 2016
 Total Scan time:  2.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]