Result of FASTA (omim) for
pFN21AE6220
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6220, 288 aa
1>>>pF1KE6220 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5102+/-0.000364; mu= 3.9112+/- 0.023
mean_var=287.2767+/-59.577, 0's: 0 Z-trim(123.3): 134 B-trim: 1870 in 2/59
Lambda= 0.075670
statistics sampled from 42733 (42982) to 42733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.504), width: 16
Scan time: 5.680
The best scores are: opt bits E(85289)
NP_775628 (OMIM: 604973,613860) ficolin-3 isoform ( 288) 2086 240.2 3.5e-63
NP_003656 (OMIM: 604973,613860) ficolin-3 isoform ( 299) 1622 189.6 6.3e-48
XP_011516694 (OMIM: 601624) PREDICTED: ficolin-2 i ( 302) 956 116.9 4.9e-26
NP_004099 (OMIM: 601624) ficolin-2 isoform a precu ( 313) 956 116.9 5e-26
NP_056652 (OMIM: 601624) ficolin-2 isoform b precu ( 275) 950 116.2 7.3e-26
XP_006717078 (OMIM: 601624) PREDICTED: ficolin-2 i ( 264) 949 116.0 7.6e-26
NP_001994 (OMIM: 601252) ficolin-1 precursor [Homo ( 326) 925 113.5 5.4e-25
NP_001315564 (OMIM: 601995) tenascin-R isoform 2 [ (1025) 708 90.4 1.5e-17
XP_011508251 (OMIM: 601995) PREDICTED: tenascin-R (1199) 708 90.5 1.7e-17
NP_003276 (OMIM: 601995) tenascin-R isoform 1 prec (1358) 708 90.6 1.8e-17
XP_016857708 (OMIM: 601995) PREDICTED: tenascin-R (1358) 708 90.6 1.8e-17
XP_016857707 (OMIM: 601995) PREDICTED: tenascin-R (1358) 708 90.6 1.8e-17
NP_036230 (OMIM: 605001) angiopoietin-related prot ( 493) 677 86.7 9.9e-17
NP_002395 (OMIM: 600596) microfibril-associated gl ( 255) 671 85.7 1e-16
NP_001185624 (OMIM: 600596) microfibril-associated ( 279) 671 85.7 1.1e-16
NP_114123 (OMIM: 609336) angiopoietin-related prot ( 470) 668 85.6 1.9e-16
XP_011526649 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16
XP_016882836 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16
XP_011526652 (OMIM: 609336) PREDICTED: angiopoieti ( 470) 668 85.6 1.9e-16
NP_001308340 (OMIM: 609336) angiopoietin-related p ( 470) 668 85.6 1.9e-16
XP_011526650 (OMIM: 609336) PREDICTED: angiopoieti ( 537) 668 85.7 2.1e-16
XP_011526651 (OMIM: 609336) PREDICTED: angiopoieti ( 537) 668 85.7 2.1e-16
XP_005260148 (OMIM: 609336) PREDICTED: angiopoieti ( 551) 668 85.7 2.1e-16
NP_116232 (OMIM: 613357) fibrinogen C domain-conta ( 461) 639 82.5 1.7e-15
NP_001138578 (OMIM: 613357) fibrinogen C domain-co ( 461) 639 82.5 1.7e-15
XP_005245634 (OMIM: 603874) PREDICTED: angiopoieti ( 491) 637 82.3 2e-15
NP_004664 (OMIM: 603874) angiopoietin-related prot ( 491) 637 82.3 2e-15
XP_005252032 (OMIM: 187380,615629) PREDICTED: tena (1564) 638 83.0 4e-15
XP_005252031 (OMIM: 187380,615629) PREDICTED: tena (1655) 638 83.0 4.1e-15
XP_006717164 (OMIM: 187380,615629) PREDICTED: tena (1655) 638 83.0 4.1e-15
XP_011516931 (OMIM: 187380,615629) PREDICTED: tena (1746) 638 83.0 4.3e-15
XP_011516930 (OMIM: 187380,615629) PREDICTED: tena (1746) 638 83.0 4.3e-15
XP_005252030 (OMIM: 187380,615629) PREDICTED: tena (1837) 638 83.1 4.4e-15
XP_011516928 (OMIM: 187380,615629) PREDICTED: tena (1929) 638 83.1 4.6e-15
XP_011516927 (OMIM: 187380,615629) PREDICTED: tena (2019) 638 83.1 4.7e-15
XP_006717161 (OMIM: 187380,615629) PREDICTED: tena (2019) 638 83.1 4.7e-15
XP_016870170 (OMIM: 187380,615629) PREDICTED: tena (2020) 638 83.1 4.7e-15
XP_005252029 (OMIM: 187380,615629) PREDICTED: tena (2110) 638 83.1 4.8e-15
XP_006717160 (OMIM: 187380,615629) PREDICTED: tena (2110) 638 83.1 4.8e-15
NP_002151 (OMIM: 187380,615629) tenascin precursor (2201) 638 83.2 5e-15
XP_016870169 (OMIM: 187380,615629) PREDICTED: tena (2292) 638 83.2 5.1e-15
XP_016870168 (OMIM: 187380,615629) PREDICTED: tena (2293) 638 83.2 5.1e-15
XP_006717159 (OMIM: 187380,615629) PREDICTED: tena (2293) 638 83.2 5.1e-15
XP_016870167 (OMIM: 187380,615629) PREDICTED: tena (2384) 638 83.2 5.2e-15
NP_115859 (OMIM: 600985,606408,615963) tenascin-X ( 673) 603 78.7 3.3e-14
NP_001300980 (OMIM: 601667) angiopoietin-1 isoform ( 298) 582 76.0 9.5e-14
NP_061978 (OMIM: 600985,606408,615963) tenascin-X (4242) 603 79.7 1.1e-13
NP_001186788 (OMIM: 601667) angiopoietin-1 isoform ( 497) 582 76.3 1.3e-13
NP_001137 (OMIM: 601667) angiopoietin-1 isoform 1 ( 498) 582 76.3 1.3e-13
XP_016868807 (OMIM: 601922) PREDICTED: angiopoieti ( 443) 575 75.5 2.1e-13
>>NP_775628 (OMIM: 604973,613860) ficolin-3 isoform 2 pr (288 aa)
initn: 2086 init1: 2086 opt: 2086 Z-score: 1255.3 bits: 240.2 E(85289): 3.5e-63
Smith-Waterman score: 2086; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 PQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 VFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 FAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 FAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHG
190 200 210 220 230 240
250 260 270 280
pF1KE6 AWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 AWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
250 260 270 280
>>NP_003656 (OMIM: 604973,613860) ficolin-3 isoform 1 pr (299 aa)
initn: 1506 init1: 1506 opt: 1622 Z-score: 981.4 bits: 189.6 E(85289): 6.3e-48
Smith-Waterman score: 2054; 96.3% identity (96.3% similar) in 299 aa overlap (1-288:1-299)
10 20 30 40 50 60
pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPG
10 20 30 40 50 60
70 80 90 100
pF1KE6 PQGPPGPPGKMGPKGEPG-----------PRNCRELLSQGATLSGWYHLCLPEGRALPVF
:::::::::::::::::: :::::::::::::::::::::::::::::::
NP_003 PQGPPGPPGKMGPKGEPGDPVNLLRCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 CDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 VELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE6 SNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
250 260 270 280 290
>>XP_011516694 (OMIM: 601624) PREDICTED: ficolin-2 isofo (302 aa)
initn: 971 init1: 831 opt: 956 Z-score: 588.4 bits: 116.9 E(85289): 4.9e-26
Smith-Waterman score: 991; 50.2% identity (73.7% similar) in 281 aa overlap (28-288:20-300)
10 20 30 40 50
pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGAPGSPGEKG
.:: . ::.: :...: .::: ::.:: ::
XP_011 MGPALLALSFLWTMALTEDTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKG
10 20 30 40 50
60 70 80 90 100
pF1KE6 APGP------QGPPGPPGKMGPKG------EP-----GPRNCRELLSQGATLSGWYHLCL
: .:::::::: :: : :: :::.:..::..: ::::. . :
XP_011 EAGTNGKRGERGPPGPPGKAGPPGPNGAPGEPQPCLTGPRTCKDLLDRGHFLSGWHTIYL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQL
:. : : :.:::::.:::: ::::: ::::::.:.:..:. :::.. .::::::.:.: :
XP_011 PDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHAL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE6 TLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPF
: ::. ::::.: ::. : ::.: .:.. :...:.:.:: : ::.:::::..:... :
XP_011 TAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSF
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE6 TTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPY
.: : :.: ...::::. .::::: .:. ::::::: . .. ::.: ::.: .. :
XP_011 STKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSY
240 250 260 270 280 290
pF1KE6 RRVRMMLR
. .: .:
XP_011 KVSEMKVRPA
300
>>NP_004099 (OMIM: 601624) ficolin-2 isoform a precursor (313 aa)
initn: 971 init1: 831 opt: 956 Z-score: 588.2 bits: 116.9 E(85289): 5e-26
Smith-Waterman score: 998; 48.7% identity (72.3% similar) in 300 aa overlap (9-288:14-311)
10 20 30 40 50
pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGAPGS
.: : .:: :.. . .:: . ::.: :...: .::: ::.
NP_004 MELDRAVGVLGAATLLLSFLGMAWALQAAD--TCPEVKMVGLEGSDKLTILRGCPGLPGA
10 20 30 40 50
60 70 80 90
pF1KE6 PGEKGAPGP------QGPPGPPGKMGPKG------EP-----GPRNCRELLSQGATLSGW
:: :: : .:::::::: :: : :: :::.:..::..: ::::
NP_004 PGPKGEAGTNGKRGERGPPGPPGKAGPPGPNGAPGEPQPCLTGPRTCKDLLDRGHFLSGW
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE6 YHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNE
. . ::. : : :.:::::.:::: ::::: ::::::.:.:..:. :::.. .::::::.
NP_004 HTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGND
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE6 NLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLH
:.: :: ::. ::::.: ::. : ::.: .:.. :...:.:.:: : ::.:::::..:
NP_004 NIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFH
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE6 SGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRG
... :.: : :.: ...::::. .::::: .:. ::::::: . .. ::.: ::.:
NP_004 NNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKG
240 250 260 270 280 290
280
pF1KE6 VGHPYRRVRMMLR
.. :. .: .:
NP_004 YNYSYKVSEMKVRPA
300 310
>>NP_056652 (OMIM: 601624) ficolin-2 isoform b precursor (275 aa)
initn: 956 init1: 831 opt: 950 Z-score: 585.3 bits: 116.2 E(85289): 7.3e-26
Smith-Waterman score: 950; 52.2% identity (75.9% similar) in 245 aa overlap (49-288:29-273)
20 30 40 50 60 70
pF1KE6 ACLKTQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEP-
: :::.: ::: : :::: : :::
NP_056 MELDRAVGVLGAATLLLSFLGMAWALQAADTCPGERGPPGPPGKAGPPGPNGAPGEPQ
10 20 30 40 50
80 90 100 110 120 130
pF1KE6 ----GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFF
:::.:..::..: ::::. . ::. : : :.:::::.:::: ::::: ::::::.
NP_056 PCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFY
60 70 80 90 100 110
140 150 160 170 180 190
pF1KE6 RSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEV
:.:..:. :::.. .::::::.:.: :: ::. ::::.: ::. : ::.: .:.. :.
NP_056 RDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEA
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE6 DHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLN
..:.:.:: : ::.:::::..:... :.: : :.: ...::::. .::::: .:. ::::
NP_056 EKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLN
180 190 200 210 220 230
260 270 280
pF1KE6 GRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
::: . .. ::.: ::.: .. :. .: .:
NP_056 GRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA
240 250 260 270
>>XP_006717078 (OMIM: 601624) PREDICTED: ficolin-2 isofo (264 aa)
initn: 955 init1: 831 opt: 949 Z-score: 584.9 bits: 116.0 E(85289): 7.6e-26
Smith-Waterman score: 949; 52.7% identity (76.8% similar) in 241 aa overlap (53-288:22-262)
30 40 50 60 70
pF1KE6 TQEHPSCPGPRELEASKVVLLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEP-----
:::.: ::: : :::: : :::
XP_006 MGPALLALSFLWTMALTEDTCPGERGPPGPPGKAGPPGPNGAPGEPQPCLT
10 20 30 40 50
80 90 100 110 120 130
pF1KE6 GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWS
:::.:..::..: ::::. . ::. : : :.:::::.:::: ::::: ::::::.:.:.
XP_006 GPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWA
60 70 80 90 100 110
140 150 160 170 180 190
pF1KE6 SYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQ
.:. :::.. .::::::.:.: :: ::. ::::.: ::. : ::.: .:.. :...:.
XP_006 TYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYN
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE6 LALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYA
:.:: : ::.:::::..:... :.: : :.: ...::::. .::::: .:. :::::::
XP_006 LVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYL
180 190 200 210 220 230
260 270 280
pF1KE6 VSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
. .. ::.: ::.: .. :. .: .:
XP_006 RGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA
240 250 260
>>NP_001994 (OMIM: 601252) ficolin-1 precursor [Homo sap (326 aa)
initn: 1422 init1: 823 opt: 925 Z-score: 569.7 bits: 113.5 E(85289): 5.4e-25
Smith-Waterman score: 937; 45.7% identity (67.2% similar) in 317 aa overlap (4-288:12-324)
10 20 30 40
pF1KE6 MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRE--LEAS-KVVLLPSCPGA
: .: :.: . . :: : .:: . ::.: :...: .:::
NP_001 MELSGATMARGLAVLLVLFLHIKNLPA----QAADTCPEVKVVGLEGSDKLTILRGCPGL
10 20 30 40 50
50 60 70 80
pF1KE6 PGSPGEKG---------------APGPQGPPGPPGKMGPKG--------------EPGPR
::.:: :: ::: :: :: : : :: :::
NP_001 PGAPGPKGEAGVIGERGERGLPGAPGKAGPVGPKGDRGEKGMRGEKGDAGQSQSCATGPR
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE6 NCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYR
::..::..: ::::. . ::. : : :.:::::.:::: :::::.::::::.:.:..:.
NP_001 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYK
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE6 AGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLAL
:::.: .::::::.:.: :: ::. ::::.: ::.::. ::.: .:.. :...:.:.:
NP_001 QGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVL
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE6 GKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSE
: : :.::.::. :.. :.: : :.: :.:::: .::::::.:. ::::: : ..
NP_001 GAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGP
240 250 260 270 280 290
270 280
pF1KE6 AAAHKYGIDWASGRGVGHPYRRVRMMLR
.. ::.:....: . :. .: .:
NP_001 HESYANGINWSAAKGYKYSYKVSEMKVRPA
300 310 320
>>NP_001315564 (OMIM: 601995) tenascin-R isoform 2 [Homo (1025 aa)
initn: 578 init1: 338 opt: 708 Z-score: 435.9 bits: 90.4 E(85289): 1.5e-17
Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:795-1008)
50 60 70 80 90 100
pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL-
: . : :..: . : .: :::: : . :
NP_001 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN
770 780 790 800 810 820
110 120 130 140 150
pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ
.. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:.
NP_001 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR
830 840 850 860 870 880
160 170 180 190 200 210
pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP
.: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.:::
NP_001 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP
890 900 910 920 930 940
220 230 240 250 260 270
pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP
:.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .:
NP_001 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS
950 960 970 980 990
280
pF1KE6 YRRVRMMLR
:.: .:
NP_001 IPFVEMKMRPYNHRLMAGRKRQSLQF
1000 1010 1020
>>XP_011508251 (OMIM: 601995) PREDICTED: tenascin-R isof (1199 aa)
initn: 578 init1: 338 opt: 708 Z-score: 435.2 bits: 90.5 E(85289): 1.7e-17
Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:969-1182)
50 60 70 80 90 100
pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL-
: . : :..: . : .: :::: : . :
XP_011 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN
940 950 960 970 980 990
110 120 130 140 150
pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ
.. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:.
XP_011 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR
1000 1010 1020 1030 1040 1050
160 170 180 190 200 210
pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP
.: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.:::
XP_011 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP
1060 1070 1080 1090 1100 1110
220 230 240 250 260 270
pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP
:.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .:
XP_011 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS
1120 1130 1140 1150 1160 1170
280
pF1KE6 YRRVRMMLR
:.: .:
XP_011 IPFVEMKMRPYNHRLMAGRKRQSLQF
1180 1190
>>NP_003276 (OMIM: 601995) tenascin-R isoform 1 precurso (1358 aa)
initn: 578 init1: 338 opt: 708 Z-score: 434.5 bits: 90.6 E(85289): 1.8e-17
Smith-Waterman score: 708; 47.5% identity (72.6% similar) in 219 aa overlap (72-288:1128-1341)
50 60 70 80 90 100
pF1KE6 LLPSCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCL-
: . : :..: . : .: :::: : . :
NP_003 GLLENTDYTVLLQAAQDTTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLN
1100 1110 1120 1130 1140 1150
110 120 130 140 150
pF1KE6 -PEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQ
.. : :.::: :.::::.::::::.:..::::.:..::.:::: :.::::: .:.:.
NP_003 GELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHR
1160 1170 1180 1190 1200 1210
160 170 180 190 200 210
pF1KE6 LTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRP
.: :: .::::...: . . .:: : : . . :.: .:... :::::::: :.:::
NP_003 ITSQGRYELRVDMRD-GQEAAFASYDRFSVEDSRNLYKLRIGSYN-GTAGDSLSYHQGRP
1220 1230 1240 1250 1260 1270
220 230 240 250 260 270
pF1KE6 FTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHP
:.: : :.: . .:::. .::::: .:.:.::::.:. :. :. ::.: .:
NP_003 FSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESR---HSQGINWYHWKGHEFS
1280 1290 1300 1310 1320 1330
280
pF1KE6 YRRVRMMLR
:.: .:
NP_003 IPFVEMKMRPYNHRLMAGRKRQSLQF
1340 1350
288 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:12:13 2016 done: Tue Nov 8 11:12:14 2016
Total Scan time: 5.680 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]