FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6219, 182 aa
  1>>>pF1KE6219 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9315+/-0.000811; mu= 6.1201+/- 0.049
 mean_var=117.7238+/-23.533, 0's: 0 Z-trim(111.8): 20  B-trim: 84 in 1/50
 Lambda= 0.118207
 statistics sampled from 12617 (12633) to 12617 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182) 1191 213.1 7.5e-56
CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182) 1161 208.0 2.6e-54
CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1           ( 187)  694 128.4 2.5e-30
CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19         ( 210)  677 125.5 2.1e-29


>>CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 1191 init1: 1191 opt: 1191  Z-score: 1116.2  bits: 213.1 E(32554): 7.5e-56
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES
              130       140       150       160       170       180

         
pF1KE6 ES
       ::
CCDS31 ES
         

>>CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 1161 init1: 1161 opt: 1161  Z-score: 1088.5  bits: 208.0 E(32554): 2.6e-54
Smith-Waterman score: 1161; 97.8% identity (99.5% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE
       :.. .:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES
              130       140       150       160       170       180

         
pF1KE6 ES
       ::
CCDS53 ES
         

>>CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1                (187 aa)
 initn: 580 init1: 458 opt: 694  Z-score: 657.9  bits: 128.4 E(32554): 2.5e-30
Smith-Waterman score: 694; 58.6% identity (83.4% similar) in 181 aa overlap (1-180:1-180)

               10        20        30        40        50          
pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPG-SMS
       : . :.. .  ..:.  :::.::  :    :.:. .:::::  ::::. : :.  : :.:
CCDS14 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 EVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSA
        .:.::..::::.....::.::.:..  ....:..:.. :..:::::::::::::::.::
CCDS14 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMDLRGKFKRPPLRRVRVSA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE6 DAMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFE
       ::::.::::::::: ::::::::.:::::::::: . .:::::::.:  ::::::::::.
CCDS14 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPV-EVGDWRKNVEAMSGMEGRKKMFD
              130       140       150        160       170         

     180       
pF1KE6 SES     
       .       
CCDS14 AAKSPTSQ
     180       

>>CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19              (210 aa)
 initn: 532 init1: 430 opt: 677  Z-score: 641.5  bits: 125.5 E(32554): 2.1e-29
Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (5-180:36-210)

                                         10        20        30    
pF1KE6                           MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE
                                     .:...  ..:. .::...::::  :::.: 
CCDS42 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA
          10        20        30        40        50        60     

           40        50         60        70        80        90   
pF1KE6 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL
        .:..::   :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :.  :.
CCDS42 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI
          70        80        90       100       110       120     

           100       110       120       130       140       150   
pF1KE6 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER
        :..::.:::::::::: :::::.:::::..::::.. :  .::::.:::::::::::: 
CCDS42 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN
         130       140       150       160       170       180     

           160       170       180  
pF1KE6 DLRDVGDWRKNIEEKSGMEGRKKMFESES
         :.::::::::.  :::::::: :::  
CCDS42 --REVGDWRKNIDALSGMEGRKKKFES  
           190       200       210  




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:11:44 2016 done: Tue Nov  8 11:11:44 2016
 Total Scan time:  2.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]