FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6217, 264 aa
  1>>>pF1KE6217 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0911+/-0.000342; mu= 15.9006+/- 0.021
 mean_var=61.7292+/-12.670, 0's: 0 Z-trim(113.6): 6  B-trim: 281 in 2/50
 Lambda= 0.163241
 statistics sampled from 23037 (23041) to 23037 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.27), width:  16
 Scan time:  5.300

The best scores are:                                      opt bits E(85289)
NP_004542 (OMIM: 252010,256000,603846) NADH dehydr ( 264) 1775 426.4 2.6e-119


>>NP_004542 (OMIM: 252010,256000,603846) NADH dehydrogen  (264 aa)
 initn: 1775 init1: 1775 opt: 1775  Z-score: 2263.0  bits: 426.4 E(85289): 2.6e-119
Smith-Waterman score: 1775; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE6 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE
              190       200       210       220       230       240

              250       260    
pF1KE6 AFPVYRQPPESLKLEAGDKKPDAK
       ::::::::::::::::::::::::
NP_004 AFPVYRQPPESLKLEAGDKKPDAK
              250       260    




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:10:35 2016 done: Tue Nov  8 11:10:36 2016
 Total Scan time:  5.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]