FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6212, 238 aa
  1>>>pF1KE6212 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2615+/-0.000764; mu= 13.9822+/- 0.046
 mean_var=58.7500+/-11.813, 0's: 0 Z-trim(107.2): 28  B-trim: 388 in 2/49
 Lambda= 0.167329
 statistics sampled from 9414 (9440) to 9414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS13248.1 PROCR gene_id:10544|Hs108|chr20        ( 238) 1592 392.4 1.4e-109


>>CCDS13248.1 PROCR gene_id:10544|Hs108|chr20             (238 aa)
 initn: 1592 init1: 1592 opt: 1592  Z-score: 2080.9  bits: 392.4 E(32554): 1.4e-109
Smith-Waterman score: 1592; 99.6% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KE6 MLTTLLPILLLSGWAFCSQDASDGLQRLHMLQISYFRDPYHVWYQGNASLGGHLTHVLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLTTLLPILLLSGWAFCSQDASDGLQRLHMLQISYFRDPYHVWYQGNASLGGHLTHVLEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PDTNTTIIQLQPLQEPESWARTQSGLQSYLLQFHGLVRLVHQERTLAFPLTIRCFLGCEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PDTNTTIIQLQPLQEPESWARTQSGLQSYLLQFHGLVRLVHQERTLAFPLTIRCFLGCEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PPEGSRAHVFFEVAVNGSSFVSFRPERALWQADTQVTSGVVTFTLQQLNAYNRTRYELRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPEGSRAHVFFEVAVNGSSFVSFRPERALWQADTQVTSGVVTFTLQQLNAYNRTRYELRE
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KE6 FLEDTCVQYVQKHISAENTKGSQTSRSYTSLVLGVLVGGFIIAGVAVGIFLCTGGRRC
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS13 FLEDTCVQYVQKHISAENTKGSQTSRSYTSLVLGVLVGSFIIAGVAVGIFLCTGGRRC
              190       200       210       220       230        




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:08:04 2016 done: Tue Nov  8 11:08:04 2016
 Total Scan time:  1.540 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]