Result of FASTA (ccds) for
pFN21AE6208
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6208, 193 aa
1>>>pF1KE6208 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1761+/-0.000861; mu= 13.3775+/- 0.052
mean_var=57.3573+/-11.448, 0's: 0 Z-trim(104.5): 28 B-trim: 0 in 0/51
Lambda= 0.169348
statistics sampled from 7932 (7959) to 7932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.244), width: 16
Scan time: 1.520
The best scores are: opt bits E(32554)
CCDS10357.1 AP3S2 gene_id:10239|Hs108|chr15 ( 193) 1263 316.7 5.6e-87
CCDS55977.1 AP3S2 gene_id:100526783|Hs108|chr15 ( 394) 1109 279.2 2.2e-75
CCDS4123.1 AP3S1 gene_id:1176|Hs108|chr5 ( 193) 1089 274.2 3.5e-74
CCDS83021.1 AP3S1 gene_id:1176|Hs108|chr5 ( 162) 873 221.4 2.3e-58
CCDS47669.1 AP1S1 gene_id:1174|Hs108|chr7 ( 158) 353 94.3 4e-20
CCDS33062.1 AP2S1 gene_id:1175|Hs108|chr19 ( 142) 352 94.1 4.3e-20
CCDS77323.1 AP2S1 gene_id:1175|Hs108|chr19 ( 156) 350 93.6 6.5e-20
CCDS75958.1 AP1S2 gene_id:8905|Hs108|chrX ( 160) 350 93.6 6.7e-20
CCDS42827.1 AP1S3 gene_id:130340|Hs108|chr2 ( 154) 349 93.4 7.7e-20
CCDS14173.1 AP1S2 gene_id:8905|Hs108|chrX ( 157) 349 93.4 7.8e-20
CCDS77322.1 AP2S1 gene_id:1175|Hs108|chr19 ( 144) 345 92.4 1.4e-19
CCDS77321.1 AP2S1 gene_id:1175|Hs108|chr19 ( 158) 345 92.4 1.5e-19
CCDS45093.1 AP4S1 gene_id:11154|Hs108|chr14 ( 144) 340 91.1 3.3e-19
CCDS58309.1 AP4S1 gene_id:11154|Hs108|chr14 ( 149) 236 65.7 1.5e-11
CCDS9642.1 AP4S1 gene_id:11154|Hs108|chr14 ( 159) 236 65.8 1.6e-11
>>CCDS10357.1 AP3S2 gene_id:10239|Hs108|chr15 (193 aa)
initn: 1263 init1: 1263 opt: 1263 Z-score: 1675.0 bits: 316.7 E(32554): 5.6e-87
Smith-Waterman score: 1263; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
130 140 150 160 170 180
190
pF1KE6 DLNIKVPNLSQFV
:::::::::::::
CCDS10 DLNIKVPNLSQFV
190
>>CCDS55977.1 AP3S2 gene_id:100526783|Hs108|chr15 (394 aa)
initn: 1109 init1: 1109 opt: 1109 Z-score: 1466.8 bits: 279.2 E(32554): 2.2e-75
Smith-Waterman score: 1109; 98.3% identity (100.0% similar) in 173 aa overlap (21-193:222-394)
10 20 30 40 50
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFL
...:::::::::::::::::::::::::::
CCDS55 GASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWPEEIQQQIVRETFHLVLKRDDNICNFL
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE6 EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLI
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE6 FHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINL
320 330 340 350 360 370
180 190
pF1KE6 PEIPRNINIGDLNIKVPNLSQFV
:::::::::::::::::::::::
CCDS55 PEIPRNINIGDLNIKVPNLSQFV
380 390
>>CCDS4123.1 AP3S1 gene_id:1176|Hs108|chr5 (193 aa)
initn: 1107 init1: 1089 opt: 1089 Z-score: 1445.3 bits: 274.2 E(32554): 3.5e-74
Smith-Waterman score: 1089; 84.4% identity (94.8% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
::.:::.::::::::: .::: . :. ::::.::::::: :::.:.::::::: ::::::
CCDS41 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::: ::
CCDS41 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
:.:::::::::::::::.::.:::.:::::.::..:::::::::::.::::::::::::
CCDS41 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIG
130 140 150 160 170 180
190
pF1KE6 DLNIKVPNLSQFV
:..:::::: .:
CCDS41 DISIKVPNLPSFK
190
>>CCDS83021.1 AP3S1 gene_id:1176|Hs108|chr5 (162 aa)
initn: 870 init1: 870 opt: 873 Z-score: 1161.3 bits: 221.4 E(32554): 2.3e-58
Smith-Waterman score: 873; 82.3% identity (91.8% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
::.:::.::::::::: .::: . :. ::::.::::::: :::.:.::::::: ::::::
CCDS83 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::: ::
CCDS83 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
:.:::::::::::::::.::.:::.::::: . .:
CCDS83 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSETFIFQSPRQDR
130 140 150 160
190
pF1KE6 DLNIKVPNLSQFV
>>CCDS47669.1 AP1S1 gene_id:1174|Hs108|chr7 (158 aa)
initn: 350 init1: 228 opt: 353 Z-score: 474.8 bits: 94.3 E(32554): 4e-20
Smith-Waterman score: 353; 37.1% identity (72.2% similar) in 151 aa overlap (1-151:1-145)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
:.. .:.:. .:: :: ..: .. ....::: ...:: : ..:.::: :
CCDS47 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
:..:..::.::: ......:: :.::. .:: ::: : .:::::.::...:...::
CCDS47 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
.: .::: : .:. . .. :: . :.. .
CCDS47 DEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
120 130 140 150
190
pF1KE6 DLNIKVPNLSQFV
>>CCDS33062.1 AP2S1 gene_id:1175|Hs108|chr19 (142 aa)
initn: 365 init1: 258 opt: 352 Z-score: 474.2 bits: 94.1 E(32554): 4.3e-20
Smith-Waterman score: 352; 37.8% identity (73.6% similar) in 148 aa overlap (1-148:1-142)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
::. ::. : :: ::...:..: .. .:....:. .: :: . ::.: .
CCDS33 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
.:.:::.:: ::: .::: ....:. :. :. :::.:.. :.:::::::.:.. ::. ..
CCDS33 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
.:. ..: . ::...... :. . ::
CCDS33 DEMFLAGEIRETSQTKVLKQLLMLQSLE
120 130 140
>>CCDS77323.1 AP2S1 gene_id:1175|Hs108|chr19 (156 aa)
initn: 365 init1: 258 opt: 350 Z-score: 470.9 bits: 93.6 E(32554): 6.5e-20
Smith-Waterman score: 350; 36.5% identity (72.4% similar) in 156 aa overlap (1-148:1-156)
10 20 30 40 50
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLE--------G
::. ::. : :: ::...:..: .. .:....:. .: :: . ::.: .
CCDS77 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEVLAISVADS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH
:.. ..:.:::.:: ::: .::: ....:. :. :. :::.:.. :.:::::::.:.
CCDS77 LSVLQFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 MDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPE
. ::. ...:. ..: . ::...... :. . ::
CCDS77 FYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
130 140 150
180 190
pF1KE6 IPRNINIGDLNIKVPNLSQFV
>>CCDS75958.1 AP1S2 gene_id:8905|Hs108|chrX (160 aa)
initn: 331 init1: 227 opt: 350 Z-score: 470.8 bits: 93.6 E(32554): 6.7e-20
Smith-Waterman score: 350; 36.6% identity (69.6% similar) in 161 aa overlap (2-162:1-153)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
.: .:.:. .:: :: ..: . .. ...:.:: . :: : ..:.::: :
CCDS75 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RD
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
:..:..::.::: ......:: :..:. .:: ::: : .:::::.::...:...::
CCDS75 LKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
.: ..:: : ::. .... :: . :. : . : :.:
CCDS75 DEFLLGGEVQETSKKNVLKAIEQADLLQ--EDAKEAETPRSVLEEIGLT
120 130 140 150 160
190
pF1KE6 DLNIKVPNLSQFV
>>CCDS42827.1 AP1S3 gene_id:130340|Hs108|chr2 (154 aa)
initn: 351 init1: 258 opt: 349 Z-score: 469.7 bits: 93.4 E(32554): 7.7e-20
Smith-Waterman score: 349; 36.7% identity (72.0% similar) in 150 aa overlap (1-150:1-144)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
::. ::.:. .:: :: ..: .:.. ...:.:: ...:.: .:.. :
CCDS42 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKEL-----
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
::.:..::.::: ......:: :.... .:: ::: : ::::::.::...:...::
CCDS42 -KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
.: ..:: . ::. . : :: .. :...
CCDS42 DEFIIGGEIQETSKKIAVKAIEDSDMLQETMEEYMNKPTF
120 130 140 150
>>CCDS14173.1 AP1S2 gene_id:8905|Hs108|chrX (157 aa)
initn: 331 init1: 227 opt: 349 Z-score: 469.6 bits: 93.4 E(32554): 7.8e-20
Smith-Waterman score: 349; 37.2% identity (72.3% similar) in 148 aa overlap (2-149:1-142)
10 20 30 40 50 60
pF1KE6 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD
.: .:.:. .:: :: ..: . .. ...:.:: . :: : ..:.::: :
CCDS14 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEW------RD
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL
:..:..::.::: ......:: :..:. .:: ::: : .:::::.::...:...::
CCDS14 LKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFIL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIG
.: ..:: : ::. .... :: . :..
CCDS14 DEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEIGLT
120 130 140 150
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:05:45 2016 done: Tue Nov 8 11:05:46 2016
Total Scan time: 1.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]