Result of FASTA (ccds) for
pFN21AE6206
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6206, 198 aa
1>>>pF1KE6206 198 - 198 aa - 198 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9573+/-0.000798; mu= 14.5208+/- 0.048
mean_var=57.5888+/-11.770, 0's: 0 Z-trim(106.9): 17 B-trim: 138 in 1/48
Lambda= 0.169007
statistics sampled from 9267 (9283) to 9267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.285), width: 16
Scan time: 1.180
The best scores are: opt bits E(32554)
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 1397 348.6 1.5e-96
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 1020 256.7 6.6e-69
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 489 127.3 1.1e-29
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 485 126.2 1.2e-29
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 449 117.6 9.9e-27
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 402 106.1 2.8e-23
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 378 100.1 9.2e-22
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 378 100.1 9.2e-22
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 379 100.5 1.3e-21
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 369 97.9 3.9e-21
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 369 97.9 3.9e-21
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 358 95.3 3e-20
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 355 94.7 7.3e-20
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 299 80.8 4.7e-16
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 288 78.2 4.3e-15
>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa)
initn: 1397 init1: 1397 opt: 1397 Z-score: 1847.0 bits: 348.6 E(32554): 1.5e-96
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL
130 140 150 160 170 180
190
pF1KE6 LPLYEVDDLRDAFRTLGL
::::::::::::::::::
CCDS41 LPLYEVDDLRDAFRTLGL
190
>>CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 (188 aa)
initn: 1009 init1: 1009 opt: 1020 Z-score: 1350.5 bits: 256.7 E(32554): 6.6e-69
Smith-Waterman score: 1282; 94.9% identity (94.9% similar) in 198 aa overlap (1-198:1-188)
10 20 30 40 50 60
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL
:::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS81 AEPEGLRRLHRAGVQIAIMTFK----------ENHERTFKAWEGLHENSVRLSRQLRRIL
130 140 150 160 170
190
pF1KE6 LPLYEVDDLRDAFRTLGL
::::::::::::::::::
CCDS81 LPLYEVDDLRDAFRTLGL
180
>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa)
initn: 606 init1: 232 opt: 489 Z-score: 646.3 bits: 127.3 E(32554): 1.1e-29
Smith-Waterman score: 489; 43.1% identity (69.0% similar) in 174 aa overlap (11-180:200-372)
10 20 30 40
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT
: ..:::.: : :: :..::.... .
CCDS33 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS
170 180 190 200 210 220
50 60 70 80 90
pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD
: : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::.
CCDS33 PVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE
230 240 250 260 270 280
100 110 120 130 140 150
pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE
:: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : .
CCDS33 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD
290 300 310 320 330 340
160 170 180 190
pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
. :: :.::. : . :. .:..::
CCDS33 EPFKPWKGLKYNFLFLDSKLQEILE
350 360 370
>--
initn: 347 init1: 194 opt: 378 Z-score: 500.1 bits: 100.3 E(32554): 1.6e-21
Smith-Waterman score: 378; 36.7% identity (64.4% similar) in 180 aa overlap (6-180:12-188)
10 20 30 40
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL
: : : :.: : : .::.: .::: :: . . :: : : .
CCDS33 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-RLDAKIFRGQV
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 RNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIF
.. :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: :
CCDS33 YSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTIS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 TARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENS
.::::. .: . ..: :: .::... :: ... :::..:: .. . : : . .:
CCDS33 AARLYYYWERDYR-RALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNY
120 130 140 150 160 170
170 180 190
pF1KE6 VRLSRQLRRILLPLYEVDDLRDAFRTLGL
. : : :..::
CCDS33 AFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGV
180 190 200 210 220 230
>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa)
initn: 495 init1: 238 opt: 485 Z-score: 645.5 bits: 126.2 E(32554): 1.2e-29
Smith-Waterman score: 485; 44.9% identity (69.3% similar) in 176 aa overlap (11-180:17-189)
10 20 30 40 50
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVK--RRDSATSFSLDFGYLRNK
: .::::. :. : ::.::..:. .: :..:.. : .::.
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKT--GVFRNQ
10 20 30 40 50
60 70 80 90 100
pF1KE6 ----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI
. ::.: :: .. : :.:. :.:::.:::::: ::: .::.:: . :..: :
CCDS13 VDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 FTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHEN
::::::. . :::: : . :: . :: ..:. :::..:: : .. :: :.::. :
CCDS13 FTARLYYFQ-YPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTN
120 130 140 150 160 170
170 180 190
pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL
:.:.::. :
CCDS13 FRLLKRRLRESLQ
180 190
>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa)
initn: 494 init1: 221 opt: 449 Z-score: 593.4 bits: 117.6 E(32554): 9.9e-27
Smith-Waterman score: 449; 40.8% identity (66.7% similar) in 174 aa overlap (11-180:213-385)
10 20 30 40
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT
: ..:::. : :: :..::.... .
CCDS46 WYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHS
190 200 210 220 230 240
50 60 70 80 90
pF1KE6 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD
. : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::.
CCDS46 AVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE
250 260 270 280 290 300
100 110 120 130 140 150
pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE
:: . :..: :::::: . : . ::: : . :... :: .::. ::..:: . .
CCDS46 FLARHSNVNLTIFTARLCYFWDTDYQ-EGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD
310 320 330 340 350 360
160 170 180 190
pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
. :: :.::. : :.:.::.::
CCDS46 EPFKPWKGLQTNFRLLKRRLREILQ
370 380
>--
initn: 407 init1: 198 opt: 381 Z-score: 503.8 bits: 101.0 E(32554): 9.7e-22
Smith-Waterman score: 381; 35.2% identity (59.1% similar) in 193 aa overlap (6-180:12-201)
10 20 30 40
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFG-------
: : : .:.: :: :.::: :: . . ... : :
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
10 20 30 40 50 60
50 60 70 80 90
pF1KE6 -----------YLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD
:.: .: :.:. :: .. : .: ...:::.::.:: :. .:.
CCDS46 PKRQSNHRQEVYFRFEN--HAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTK
70 80 90 100 110
100 110 120 130 140 150
pF1KE6 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE
:: .::..: : .::::. .:: . : :::.::... :: ..:. :::..:: :.
CCDS46 FLAEHPNVTLTISAARLYYYRDRDWR-WVLLRLHKAGARVKIMDYEDFAYCWENFVCNEG
120 130 140 150 160 170
160 170 180 190
pF1KE6 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
. : : . .: . : : :..::
CCDS46 QPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEV
180 190 200 210 220 230
>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa)
initn: 459 init1: 207 opt: 402 Z-score: 531.5 bits: 106.1 E(32554): 2.8e-23
Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (6-180:197-379)
10 20 30
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR
:. : ..:.: :..::.:::::: :.:
CCDS13 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER
170 180 190 200 210 220
40 50 60 70 80
pF1KE6 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS
:. . .. :.: :. .: :.:: :: : : :: . :::: :::::
CCDS13 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS
230 240 250 260 270 280
90 100 110 120 130 140
pF1KE6 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF
::..::...: :. : ..:: :::::.: .:. :::: : .::..:.:::....
CCDS13 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK
290 300 310 320 330 340
150 160 170 180 190
pF1KE6 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
.::.:::... :. :.:: :.: :: .:: ::
CCDS13 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN
350 360 370 380
>--
initn: 296 init1: 166 opt: 335 Z-score: 443.2 bits: 89.8 E(32554): 2.3e-18
Smith-Waterman score: 335; 36.2% identity (61.6% similar) in 185 aa overlap (6-180:12-193)
10 20 30 40
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRET-YLCYVVKRRDSATSFSLD---F-GYL
: : : :.: : : .::.: .::: :: . . :: : : .
CCDS13 MKPHFRNTVERMYRDTFSYNFYN-RPILSRRNTVWLCYEVKTKGPSRP-PLDAKIFRGQV
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 RNKNGCHVELLFLRYISDW-DLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRI
.. : :. :....: : : . :.:::. ::::: :.: .: :: .:...: :
CCDS13 YSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 FTARLYFCEDRKAEPEGLRRL--HRAG--VQIAIMTFKDYFYCWNTFVENHERTFKAWEG
:.::::. : . :.:: : .: : . . ::.. .. .::. :: .... :. :..
CCDS13 FVARLYYFWDPDYQ-EALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNN
120 130 140 150 160 170
170 180 190
pF1KE6 LHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
: . . : .: .::
CCDS13 LPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ
180 190 200 210 220 230
>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 (199 aa)
initn: 368 init1: 291 opt: 378 Z-score: 504.2 bits: 100.1 E(32554): 9.2e-22
Smith-Waterman score: 461; 43.6% identity (68.6% similar) in 188 aa overlap (5-180:12-194)
10 20 30 40 50
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLD--FGYLRN
::. . : .:.: . ::..::::: :.: :..:: ..: :.:.:
CCDS13 MEASPASGPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHN
10 20 30 40 50
60 70 80 90 100
pF1KE6 --KN------GCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGN
:: : :.:: :: . . .:::.. :::::: :::::.. :: .: ::. :
CCDS13 QAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 PNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKA
.. ::::.::.: . :.:. :. ::.:..:::. .. .::.:::... :.
CCDS13 THVRLRIFAARIY--DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQP
120 130 140 150 160 170
170 180 190
pF1KE6 WEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
:.:: :.: :: .:: ::
CCDS13 WDGLDEHSQALSGRLRAILQNQGN
180 190
>>CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 (200 aa)
initn: 330 init1: 235 opt: 378 Z-score: 504.1 bits: 100.1 E(32554): 9.2e-22
Smith-Waterman score: 378; 35.8% identity (63.7% similar) in 190 aa overlap (5-182:3-183)
10 20 30 40 50
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETY-----LCYVVKRRDSATSFSLDFGYLRNKNGC
:.. . : ::.: : . :: : ::: . ....: ::..::. :
CCDS54 MALLTAETFRLQFNNKR--RLRRPYYPRKALLCYQLTPQNGSTPTR---GYFENKKKC
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF
:.:. :. :.. :: .::.:: . .:::: .:: ...::.... .:.: ::..:::.
CCDS54 HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 --CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERT-----FKAWEGLHEN
: : . .::: : . : . .: : .. ::..::. ::. .: : : .:
CCDS54 HWC---KPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVD-HEKPLSFNPYKMLEELDKN
120 130 140 150 160
170 180 190
pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL
: ..:.:.:: .:
CCDS54 SRAIKRRLERIKIPGVRAQGRYMDILCDAEV
170 180 190 200
>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa)
initn: 413 init1: 293 opt: 379 Z-score: 501.2 bits: 100.5 E(32554): 1.3e-21
Smith-Waterman score: 460; 43.6% identity (66.5% similar) in 188 aa overlap (5-180:192-377)
10 20 30
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVK
::. : ..:.: . ::.::::: :.
CCDS13 YNEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVE
170 180 190 200 210 220
40 50 60 70 80
pF1KE6 RRDSATSFSLD--FGYLRN--KN------GCHVELLFLRYISDWDLDPGRCYRVTWFTSW
: :..: .: .:.: : :: : :.:: :: . . .:::.. :::::: ::
CCDS13 RLDNGTWVLMDQHMGFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISW
230 240 250 260 270 280
90 100 110 120 130 140
pF1KE6 SPCYD--CARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFK
:::.. :: .: ::. : .. ::::.::.: . :.:. :. ::.:..:::.
CCDS13 SPCFSWGCAGEVRAFLQENTHVRLRIFAARIY--DYDPLYKEALQMLRDAGAQVSIMTYD
290 300 310 320 330
150 160 170 180 190
pF1KE6 DYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
.. :::.::: . :. :.::.:.: :: .:: ::
CCDS13 EFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
340 350 360 370 380
>--
initn: 394 init1: 195 opt: 418 Z-score: 552.6 bits: 110.0 E(32554): 1.8e-24
Smith-Waterman score: 418; 36.9% identity (65.4% similar) in 179 aa overlap (6-180:12-189)
10 20 30 40 50
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRN---
: : : .:.: :: :.::: :: . . ... : : .:.
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 -KNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFT
: :.:. :: .. .: .:...:::.::.:: ::. ..:.:: .::..: : .
CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 ARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSV
::::. .: . ..: :: .::....:: .... :::..:: :. . : : . :: .
CCDS13 ARLYYYWERDYR-RALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA
130 140 150 160 170
180 190
pF1KE6 RLSRQLRRILLPLYEVDDLRDAFRTLGL
: : :..::
CCDS13 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC
180 190 200 210 220 230
>>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa)
initn: 330 init1: 235 opt: 369 Z-score: 492.9 bits: 97.9 E(32554): 3.9e-21
Smith-Waterman score: 369; 35.8% identity (63.6% similar) in 187 aa overlap (5-179:3-180)
10 20 30 40 50
pF1KE6 MDSLLMNRRKFLYQFKNVRWAKGRRETY-----LCYVVKRRDSATSFSLDFGYLRNKNGC
:.. . : ::.: : . :: : ::: . ....: ::..::. :
CCDS54 MALLTAETFRLQFNNKR--RLRRPYYPRKALLCYQLTPQNGSTPTR---GYFENKKKC
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF
:.:. :. :.. :: .::.:: . .:::: .:: ...::.... .:.: ::..:::.
CCDS54 HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 --CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERT-----FKAWEGLHEN
: : . .::: : . : . .: : .. ::..::. ::. .: : : .:
CCDS54 HWC---KPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVD-HEKPLSFNPYKMLEELDKN
120 130 140 150 160
170 180 190
pF1KE6 SVRLSRQLRRILLPLYEVDDLRDAFRTLGL
: ..:.:.::
CCDS54 SRAIKRRLERIKS
170 180
198 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:04:46 2016 done: Tue Nov 8 11:04:47 2016
Total Scan time: 1.180 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]