Result of FASTA (ccds) for
pFN21AE6205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6205, 179 aa
1>>>pF1KE6205 179 - 179 aa - 179 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2835+/-0.000932; mu= 12.0901+/- 0.056
mean_var=53.7785+/-10.895, 0's: 0 Z-trim(103.1): 27 B-trim: 0 in 0/52
Lambda= 0.174892
statistics sampled from 7246 (7255) to 7246 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.223), width: 16
Scan time: 1.490
The best scores are: opt bits E(32554)
CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 ( 179) 1182 306.2 6.8e-84
CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 ( 153) 1009 262.6 8.1e-71
CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 ( 192) 985 256.5 6.6e-69
CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 ( 164) 961 250.5 3.8e-67
CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 ( 185) 953 248.5 1.7e-66
CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 ( 161) 814 213.4 5.5e-56
CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 ( 129) 523 139.9 5.7e-34
>>CCDS45340.1 SEC11A gene_id:23478|Hs108|chr15 (179 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1619.7 bits: 306.2 E(32554): 6.8e-84
Smith-Waterman score: 1182; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
130 140 150 160 170
>>CCDS61742.1 SEC11A gene_id:23478|Hs108|chr15 (153 aa)
initn: 1009 init1: 1009 opt: 1009 Z-score: 1384.9 bits: 262.6 E(32554): 8.1e-71
Smith-Waterman score: 1009; 100.0% identity (100.0% similar) in 153 aa overlap (27-179:1-153)
10 20 30 40 50 60
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
::::::::::::::::::::::::::::::::::
CCDS61 MIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
10 20 30
70 80 90 100 110 120
pF1KE6 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
40 50 60 70 80 90
130 140 150 160 170
pF1KE6 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
100 110 120 130 140 150
>>CCDS11970.1 SEC11C gene_id:90701|Hs108|chr18 (192 aa)
initn: 985 init1: 985 opt: 985 Z-score: 1350.5 bits: 256.5 E(32554): 6.6e-69
Smith-Waterman score: 985; 80.7% identity (96.0% similar) in 176 aa overlap (4-179:16-191)
10 20 30 40
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS11 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH
::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.::
CCDS11 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF
:::::::::: ::::::::.::.::::::::::::::.::.:.:::.::::::::::.:
CCDS11 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
130 140 150 160 170 180
170
pF1KE6 LLGLFVLVHRE
..: .::..::
CCDS11 VMGAYVLLKRES
190
>>CCDS61744.1 SEC11A gene_id:23478|Hs108|chr15 (164 aa)
initn: 961 init1: 961 opt: 961 Z-score: 1318.9 bits: 250.5 E(32554): 3.8e-67
Smith-Waterman score: 961; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
:::::::::::::::::::::::::
CCDS61 DDRGLYKQGQHWLEKKDVVGRARGFYQENSSVEDRNYLFLILEL
130 140 150 160
>>CCDS61743.1 SEC11A gene_id:23478|Hs108|chr15 (185 aa)
initn: 953 init1: 953 opt: 953 Z-score: 1307.1 bits: 248.5 E(32554): 1.7e-66
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
::::::::::::::::::::::::
CCDS61 DDRGLYKQGQHWLEKKDVVGRARGMQFSFCWVYSCWFIVSKKPALLFLGRCHSFRYWMFG
130 140 150 160 170 180
>>CCDS77193.1 SEC11C gene_id:90701|Hs108|chr18 (161 aa)
initn: 836 init1: 814 opt: 814 Z-score: 1118.6 bits: 213.4 E(32554): 5.5e-56
Smith-Waterman score: 814; 83.2% identity (96.5% similar) in 143 aa overlap (4-146:16-158)
10 20 30 40
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESP
::.. :...:::::::::::::.:::::::::::::.:.::::::
CCDS77 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 IVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGH
::::::::::::::::::::::: :::::.::::::..:::.:::::::.:.:::.::
CCDS77 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 IKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLF
:::::::::: ::::::::.::.:::::::::::::..
CCDS77 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGMLFWL
130 140 150 160
170
pF1KE6 LLGLFVLVHRE
>>CCDS73776.1 SEC11A gene_id:23478|Hs108|chr15 (129 aa)
initn: 835 init1: 512 opt: 523 Z-score: 723.4 bits: 139.9 E(32554): 5.7e-34
Smith-Waterman score: 739; 71.5% identity (72.1% similar) in 179 aa overlap (1-179:1-129)
10 20 30 40 50 60
pF1KE6 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLSLDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVL-------
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 FHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAV
.::::::::::::::::
CCDS73 -------------------------------------------RQNGHIKFLTKGDNNAV
60 70
130 140 150 160 170
pF1KE6 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE
80 90 100 110 120
179 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:04:13 2016 done: Tue Nov 8 11:04:13 2016
Total Scan time: 1.490 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]