FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6204, 274 aa
  1>>>pF1KE6204 274 - 274 aa - 274 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5783+/-0.000351; mu= 14.1018+/- 0.022
 mean_var=77.5713+/-15.537, 0's: 0 Z-trim(115.2): 21  B-trim: 966 in 1/50
 Lambda= 0.145621
 statistics sampled from 25576 (25582) to 25576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.3), width:  16
 Scan time:  5.990

The best scores are:                                      opt bits E(85289)
NP_005994 (OMIM: 191327) cytochrome b-c1 complex s ( 274) 1796 386.5 2.8e-107


>>NP_005994 (OMIM: 191327) cytochrome b-c1 complex subun  (274 aa)
 initn: 1796 init1: 1796 opt: 1796  Z-score: 2047.0  bits: 386.5 E(85289): 2.8e-107
Smith-Waterman score: 1796; 99.6% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE6 MLSVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MLSVASRSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG
              190       200       210       220       230       240

              250       260       270    
pF1KE6 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG
       ::::::::::::::::::::::::::::::::::
NP_005 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG
              250       260       270    




274 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:03:36 2016 done: Tue Nov  8 11:03:37 2016
 Total Scan time:  5.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]