Result of FASTA (omim) for
pFN21AE6203
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6203, 223 aa
1>>>pF1KE6203 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1701+/-0.00036; mu= 13.8794+/- 0.022
mean_var=57.6634+/-11.690, 0's: 0 Z-trim(113.3): 50 B-trim: 0 in 0/58
Lambda= 0.168898
statistics sampled from 22589 (22634) to 22589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.265), width: 16
Scan time: 5.250
The best scores are: opt bits E(85289)
NP_005857 (OMIM: 601978,605726,614373) sigma non-o ( 223) 1520 378.5 4.8e-105
NP_001269136 (OMIM: 601978,605726,614373) sigma no ( 203) 1188 297.6 9.9e-81
NP_001269134 (OMIM: 601978,605726,614373) sigma no ( 155) 1027 258.3 5e-69
NP_671513 (OMIM: 601978,605726,614373) sigma non-o ( 192) 808 205.0 7e-53
NP_001269137 (OMIM: 601978,605726,614373) sigma no ( 159) 800 203.0 2.3e-52
NP_001269135 (OMIM: 601978,605726,614373) sigma no ( 123) 712 181.5 5.3e-46
NP_001269138 (OMIM: 601978,605726,614373) sigma no ( 110) 703 179.3 2.2e-45
>>NP_005857 (OMIM: 601978,605726,614373) sigma non-opioi (223 aa)
initn: 1520 init1: 1520 opt: 1520 Z-score: 2006.9 bits: 378.5 E(85289): 4.8e-105
Smith-Waterman score: 1520; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
130 140 150 160 170 180
190 200 210 220
pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::
NP_005 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
190 200 210 220
>>NP_001269136 (OMIM: 601978,605726,614373) sigma non-op (203 aa)
initn: 1181 init1: 1181 opt: 1188 Z-score: 1570.4 bits: 297.6 E(85289): 9.9e-81
Smith-Waterman score: 1344; 91.0% identity (91.0% similar) in 223 aa overlap (1-223:1-203)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::: :::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLG--------------------LDHELAFSR
10 20 30 40
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
110 120 130 140 150 160
190 200 210 220
pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::
NP_001 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
170 180 190 200
>>NP_001269134 (OMIM: 601978,605726,614373) sigma non-op (155 aa)
initn: 1027 init1: 1027 opt: 1027 Z-score: 1360.2 bits: 258.3 E(85289): 5e-69
Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
:::::::::::::::::::::::::::::
NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGPLTSQA
130 140 150
>>NP_671513 (OMIM: 601978,605726,614373) sigma non-opioi (192 aa)
initn: 808 init1: 808 opt: 808 Z-score: 1070.3 bits: 205.0 E(85289): 7e-53
Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-223:1-192)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG--
70 80 90 100 110
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
:::::::::::::::::::::::::::::::
NP_671 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
120 130 140
190 200 210 220
pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::
NP_671 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
150 160 170 180 190
>>NP_001269137 (OMIM: 601978,605726,614373) sigma non-op (159 aa)
initn: 822 init1: 800 opt: 800 Z-score: 1061.1 bits: 203.0 E(85289): 2.3e-52
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSVSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
NP_001 AIVTQGATGLRSRIPSSLAPSTSGERAPPKVRSSTQGRR
130 140 150
>>NP_001269135 (OMIM: 601978,605726,614373) sigma non-op (123 aa)
initn: 712 init1: 712 opt: 712 Z-score: 946.9 bits: 181.5 E(85289): 5.3e-46
Smith-Waterman score: 712; 100.0% identity (100.0% similar) in 105 aa overlap (119-223:19-123)
90 100 110 120 130 140
pF1KE6 WMGAMCLLHASLSEYVLLFGTALGSRGHSGRYWAEISDTIISGTFHQWREGTTKSEVFYP
::::::::::::::::::::::::::::::
NP_001 MRVAGWAPCAFCTPRCPRRYWAEISDTIISGTFHQWREGTTKSEVFYP
10 20 30 40
150 160 170 180 190 200
pF1KE6 GETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYAR
50 60 70 80 90 100
210 220
pF1KE6 GLRLELTTYLFGQDP
:::::::::::::::
NP_001 GLRLELTTYLFGQDP
110 120
>>NP_001269138 (OMIM: 601978,605726,614373) sigma non-op (110 aa)
initn: 703 init1: 703 opt: 703 Z-score: 935.8 bits: 179.3 E(85289): 2.2e-45
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)
10 20 30 40 50 60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEGDGSTRAW
70 80 90 100 110
130 140 150 160 170 180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
223 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:22:55 2016 done: Tue Nov 8 03:22:55 2016
Total Scan time: 5.250 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]