FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6203, 223 aa
  1>>>pF1KE6203 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1085+/-0.000804; mu= 14.2102+/- 0.048
 mean_var=55.9812+/-11.606, 0's: 0 Z-trim(106.9): 18  B-trim: 545 in 2/48
 Lambda= 0.171417
 statistics sampled from 9236 (9246) to 9236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9        ( 223) 1520 383.8 4.7e-107
CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9        ( 192)  808 207.7 4.2e-54


>>CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9             (223 aa)
 initn: 1520 init1: 1520 opt: 1520  Z-score: 2035.4  bits: 383.8 E(32554): 4.7e-107
Smith-Waterman score: 1520; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
              130       140       150       160       170       180

              190       200       210       220   
pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
              190       200       210       220   

>>CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9             (192 aa)
 initn: 808 init1: 808 opt: 808  Z-score: 1084.8  bits: 207.7 E(32554): 4.2e-54
Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-223:1-192)

               10        20        30        40        50        60
pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
                                    :::::::::::::::::::::::::::::::
CCDS65 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
                                   120       130       140         

              190       200       210       220   
pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
     150       160       170       180       190  




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:22:54 2016 done: Tue Nov  8 03:22:54 2016
 Total Scan time:  2.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]