FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6202, 189 aa
  1>>>pF1KE6202 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8903+/-0.0003; mu= 14.8782+/- 0.019
 mean_var=57.8054+/-11.805, 0's: 0 Z-trim(115.5): 24  B-trim: 53 in 1/48
 Lambda= 0.168690
 statistics sampled from 25949 (25972) to 25949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.305), width:  16
 Scan time:  4.280

The best scores are:                                      opt bits E(85289)
NP_001638 (OMIM: 107740) apolipoprotein D precurso ( 189) 1276 318.4 4.5e-87
NP_006735 (OMIM: 180250,615147,616428) retinol-bin ( 201)  195 55.3 7.4e-08
NP_001310446 (OMIM: 180250,615147,616428) retinol- ( 201)  195 55.3 7.4e-08
NP_001310447 (OMIM: 180250,615147,616428) retinol- ( 199)  185 52.8   4e-07


>>NP_001638 (OMIM: 107740) apolipoprotein D precursor [H  (189 aa)
 initn: 1276 init1: 1276 opt: 1276  Z-score: 1684.3  bits: 318.4 E(85289): 4.5e-87
Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE6 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT
              130       140       150       160       170       180

                
pF1KE6 DQVNCPKLS
       :::::::::
NP_001 DQVNCPKLS
                

>>NP_006735 (OMIM: 180250,615147,616428) retinol-binding  (201 aa)
 initn: 168 init1:  81 opt: 195  Z-score: 262.1  bits: 55.3 E(85289): 7.4e-08
Smith-Waterman score: 195; 29.9% identity (59.8% similar) in 174 aa overlap (2-158:4-165)

                 10        20        30        40         50       
pF1KE6   MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFE
          :  ::::.::..      :.: .  .  .  :.::::  .. : :: . .: :  . 
NP_006 MKWVWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF
               10              20        30        40        50    

        60        70           80        90       100       110    
pF1KE6 NGRCIQANYSLMENGKIKVLNQ---ELRADGTVNQIEGEATPVNLTEPAKLEVKFSW---
           : :..:. :.:....  .   .:  .  :   .  .: ..  .:::...:. :   
NP_006 LQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA-DMVGTFTDTEDPAKFKMKY-WGVA
           60        70        80         90       100        110  

                120       130       140             150        160 
pF1KE6 -FMPSA--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVD
        :. ..   .::. :::..::. :::    .:...:      ......:.:: ::::   
NP_006 SFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQK
            120       130           140       150       160        

             170       180              
pF1KE6 SLKNILTSNNIDVKKMTVTDQVNCPKLS     
                                        
NP_006 IVRQRQEELCLARQYRLIVHNGYCDGRSERNLL
      170       180       190       200 

>>NP_001310446 (OMIM: 180250,615147,616428) retinol-bind  (201 aa)
 initn: 168 init1:  81 opt: 195  Z-score: 262.1  bits: 55.3 E(85289): 7.4e-08
Smith-Waterman score: 195; 29.9% identity (59.8% similar) in 174 aa overlap (2-158:4-165)

                 10        20        30        40         50       
pF1KE6   MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFE
          :  ::::.::..      :.: .  .  .  :.::::  .. : :: . .: :  . 
NP_001 MKWVWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF
               10              20        30        40        50    

        60        70           80        90       100       110    
pF1KE6 NGRCIQANYSLMENGKIKVLNQ---ELRADGTVNQIEGEATPVNLTEPAKLEVKFSW---
           : :..:. :.:....  .   .:  .  :   .  .: ..  .:::...:. :   
NP_001 LQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA-DMVGTFTDTEDPAKFKMKY-WGVA
           60        70        80         90       100        110  

                120       130       140             150        160 
pF1KE6 -FMPSA--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVD
        :. ..   .::. :::..::. :::    .:...:      ......:.:: ::::   
NP_001 SFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQK
            120       130           140       150       160        

             170       180              
pF1KE6 SLKNILTSNNIDVKKMTVTDQVNCPKLS     
                                        
NP_001 IVRQRQEELCLARQYRLIVHNGYCDGRSERNLL
      170       180       190       200 

>>NP_001310447 (OMIM: 180250,615147,616428) retinol-bind  (199 aa)
 initn: 169 init1:  81 opt: 185  Z-score: 249.0  bits: 52.8 E(85289): 4e-07
Smith-Waterman score: 185; 29.6% identity (63.4% similar) in 142 aa overlap (33-158:27-163)

             10        20        30        40         50        60 
pF1KE6 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFENGRC
                                     :.::::  .. : :: . .: :  .     
NP_001     MNYSKIPAQVDLRRQTERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDN
                   10        20        30        40        50      

              70         80         90       100       110         
pF1KE6 IQANYSLMENGKIKVLNQ-ELRADGTVNQ-IEGEATPVNLTEPAKLEVKFSW----FMPS
       : :..:. :.:....  . ..:  .. .   .  .: ..  .:::...:. :    :. .
NP_001 IVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKY-WGVASFLQK
         60        70        80        90       100        110     

           120       130       140             150        160      
pF1KE6 A--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVDSLKNI
       .   .::. :::..::. :::    .:...:      ......:.:: ::::        
NP_001 GNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQR
         120       130           140       150       160       170 

        170       180              
pF1KE6 LTSNNIDVKKMTVTDQVNCPKLS     
                                   
NP_001 QEELCLARQYRLIVHNGYCDGRSERNLL
             180       190         




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:03:03 2016 done: Tue Nov  8 11:03:04 2016
 Total Scan time:  4.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]