FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6193, 90 aa
  1>>>pF1KE6193 90 - 90 aa - 90 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0530+/-0.000266; mu= 9.9906+/- 0.017
 mean_var=57.7348+/-11.103, 0's: 0 Z-trim(119.6): 14  B-trim: 0 in 0/54
 Lambda= 0.168793
 statistics sampled from 33799 (33813) to 33799 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.396), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(85289)
NP_036588 (OMIM: 602251) mitochondrial import inne (  90)  607 155.0 1.5e-38
NP_001291415 (OMIM: 607384) mitochondrial import i (  89)  124 37.4  0.0038
NP_001291414 (OMIM: 607384) mitochondrial import i (  89)  124 37.4  0.0038
NP_036592 (OMIM: 607384) mitochondrial import inne (  89)  124 37.4  0.0038
NP_001291416 (OMIM: 607384) mitochondrial import i (  89)  124 37.4  0.0038


>>NP_036588 (OMIM: 602251) mitochondrial import inner me  (90 aa)
 initn: 607 init1: 607 opt: 607  Z-score: 813.0  bits: 155.0 E(85289): 1.5e-38
Smith-Waterman score: 607; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KE6 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
               10        20        30        40        50        60

               70        80        90
pF1KE6 IHERMGKKLTELSMQDEELMKRVQQSSGPA
       ::::::::::::::::::::::::::::::
NP_036 IHERMGKKLTELSMQDEELMKRVQQSSGPA
               70        80        90

>>NP_001291415 (OMIM: 607384) mitochondrial import inner  (89 aa)
 initn:  94 init1:  51 opt: 124  Z-score: 177.4  bits: 37.4 E(85289): 0.0038
Smith-Waterman score: 124; 28.8% identity (66.1% similar) in 59 aa overlap (22-80:21-78)

               10        20        30        40        50        60
pF1KE6 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
                            ::..: .:   ::   .   :..  :..: ..:..::: 
NP_001  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLK
                10        20        30         40        50        

               70        80        90 
pF1KE6 IHERMGKKLTELSMQDEELMKRVQQSSGPA 
       . .:.. .. :  .:..: .           
NP_001 MTQRISMRFQEYHIQQNEALAAKAGLLGQPR
       60        70        80         

>>NP_001291414 (OMIM: 607384) mitochondrial import inner  (89 aa)
 initn:  94 init1:  51 opt: 124  Z-score: 177.4  bits: 37.4 E(85289): 0.0038
Smith-Waterman score: 124; 28.8% identity (66.1% similar) in 59 aa overlap (22-80:21-78)

               10        20        30        40        50        60
pF1KE6 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
                            ::..: .:   ::   .   :..  :..: ..:..::: 
NP_001  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLK
                10        20        30         40        50        

               70        80        90 
pF1KE6 IHERMGKKLTELSMQDEELMKRVQQSSGPA 
       . .:.. .. :  .:..: .           
NP_001 MTQRISMRFQEYHIQQNEALAAKAGLLGQPR
       60        70        80         

>>NP_036592 (OMIM: 607384) mitochondrial import inner me  (89 aa)
 initn:  94 init1:  51 opt: 124  Z-score: 177.4  bits: 37.4 E(85289): 0.0038
Smith-Waterman score: 124; 28.8% identity (66.1% similar) in 59 aa overlap (22-80:21-78)

               10        20        30        40        50        60
pF1KE6 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
                            ::..: .:   ::   .   :..  :..: ..:..::: 
NP_036  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLK
                10        20        30         40        50        

               70        80        90 
pF1KE6 IHERMGKKLTELSMQDEELMKRVQQSSGPA 
       . .:.. .. :  .:..: .           
NP_036 MTQRISMRFQEYHIQQNEALAAKAGLLGQPR
       60        70        80         

>>NP_001291416 (OMIM: 607384) mitochondrial import inner  (89 aa)
 initn:  94 init1:  51 opt: 124  Z-score: 177.4  bits: 37.4 E(85289): 0.0038
Smith-Waterman score: 124; 28.8% identity (66.1% similar) in 59 aa overlap (22-80:21-78)

               10        20        30        40        50        60
pF1KE6 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
                            ::..: .:   ::   .   :..  :..: ..:..::: 
NP_001  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLK
                10        20        30         40        50        

               70        80        90 
pF1KE6 IHERMGKKLTELSMQDEELMKRVQQSSGPA 
       . .:.. .. :  .:..: .           
NP_001 MTQRISMRFQEYHIQQNEALAAKAGLLGQPR
       60        70        80         




90 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:14:08 2016 done: Tue Nov  8 10:14:09 2016
 Total Scan time:  3.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]