FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6191, 161 aa
  1>>>pF1KE6191 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1721+/-0.00073; mu= 13.3163+/- 0.044
 mean_var=70.9715+/-14.396, 0's: 0 Z-trim(109.2): 12  B-trim: 462 in 1/51
 Lambda= 0.152241
 statistics sampled from 10745 (10748) to 10745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.33), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS11712.1 ATP5H gene_id:10476|Hs108|chr17        ( 161) 1069 243.2 5.2e-65
CCDS32727.1 ATP5H gene_id:10476|Hs108|chr17        ( 137)  487 115.3 1.4e-26


>>CCDS11712.1 ATP5H gene_id:10476|Hs108|chr17             (161 aa)
 initn: 1069 init1: 1069 opt: 1069  Z-score: 1280.6  bits: 243.2 E(32554): 5.2e-65
Smith-Waterman score: 1069; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE6 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME
               70        80        90       100       110       120

              130       140       150       160 
pF1KE6 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
       :::::::::::::::::::::::::::::::::::::::::
CCDS11 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
              130       140       150       160 

>>CCDS32727.1 ATP5H gene_id:10476|Hs108|chr17             (137 aa)
 initn: 475 init1: 475 opt: 487  Z-score: 590.7  bits: 115.3 E(32554): 1.4e-26
Smith-Waterman score: 855; 85.1% identity (85.1% similar) in 161 aa overlap (1-161:1-137)

               10        20        30        40        50        60
pF1KE6 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME
       :::::::::::::                        :::::::::::::::::::::::
CCDS32 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME
               70                                80        90      

              130       140       150       160 
pF1KE6 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
       :::::::::::::::::::::::::::::::::::::::::
CCDS32 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
        100       110       120       130       




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:13:07 2016 done: Tue Nov  8 10:13:07 2016
 Total Scan time:  1.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]