FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6190, 172 aa
  1>>>pF1KE6190 172 - 172 aa - 172 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6354+/-0.00027; mu= 11.9473+/- 0.017
 mean_var=80.4935+/-16.354, 0's: 0 Z-trim(121.5): 9  B-trim: 633 in 1/57
 Lambda= 0.142953
 statistics sampled from 38155 (38164) to 38155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.447), width:  16
 Scan time:  5.060

The best scores are:                                      opt bits E(85289)
NP_005825 (OMIM: 300249) mitochondrial import inne ( 172) 1190 253.8 9.9e-68
NP_006326 (OMIM: 605057) mitochondrial import inne ( 171)  928 199.8 1.8e-51
NP_001161419 (OMIM: 300249) mitochondrial import i ( 222)  889 191.8 5.9e-49
NP_037469 (OMIM: 607251) mitochondrial import inne ( 194)  152 39.8   0.003


>>NP_005825 (OMIM: 300249) mitochondrial import inner me  (172 aa)
 initn: 1190 init1: 1190 opt: 1190  Z-score: 1337.0  bits: 253.8 E(85289): 9.9e-68
Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
              130       140       150       160       170  

>>NP_006326 (OMIM: 605057) mitochondrial import inner me  (171 aa)
 initn: 908 init1: 908 opt: 928  Z-score: 1045.0  bits: 199.8 E(85289): 1.8e-51
Smith-Waterman score: 928; 75.6% identity (90.7% similar) in 172 aa overlap (1-172:1-171)

               10        20        30        40        50        60
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
       ::::::::::::::::::::::::.::::.:::::::::.:::. :::::: .:.. :::
NP_006 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
       :.:::::::::::: :::..:..::::::::::::::::::.::::.::.:::::: :::
NP_006 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::.::::::... :: :.: : :::::::  .  :.  . .:.::.
NP_006 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQ-LPSSPFGDYRQYQ
              130       140       150        160       170 

>>NP_001161419 (OMIM: 300249) mitochondrial import inner  (222 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 999.9  bits: 191.8 E(85289): 5.9e-49
Smith-Waterman score: 933; 75.5% identity (75.5% similar) in 204 aa overlap (19-172:19-222)

               10        20        30        40                    
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPV------------------
                         ::::::::::::::::::::::::                  
NP_001 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVCRLLSEAPLFIYSCSRSV
               10        20        30        40        50        60

                                             50        60        70
pF1KE6 --------------------------------GIRHRLRGSANAVRIRAPQIGGSFAVWG
                                       ::::::::::::::::::::::::::::
NP_001 SPTVNVSSERAESRPTLFMAVSLHMAWCLAHIGIRHRLRGSANAVRIRAPQIGGSFAVWG
               70        80        90       100       110       120

               80        90       100       110       120       130
pF1KE6 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG
              130       140       150       160       170       180

              140       150       160       170  
pF1KE6 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
              190       200       210       220  

>>NP_037469 (OMIM: 607251) mitochondrial import inner me  (194 aa)
 initn: 138 init1: 117 opt: 152  Z-score: 179.3  bits: 39.8 E(85289): 0.003
Smith-Waterman score: 152; 34.4% identity (55.5% similar) in 128 aa overlap (1-120:61-181)

                                             10        20          
pF1KE6                               MEEYAREPCPWRIVDDCGGAFTMGVIGG-G
                                     : : : : : .. .  : :.:..:  :. :
NP_037 YLVGDKRQPRLLEPGSLGGIPSPAKSEEQKMIEKAMESCAFKAALACVGGFVLG--GAFG
               40        50        60        70        80          

      30        40          50         60            70        80  
pF1KE6 VFQAIKGFRNAPVGIRHR--LRG-SANAVRIRAPQIGGS----FAVWGGLFSTIDCGLVR
       :: :  :. .. ::.  .   :  .:. :     : : :    ::. :..::  .: .  
NP_037 VFTA--GI-DTNVGFDPKDPYRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLIES
       90          100       110       120       130       140     

             90       100       110       120       130       140  
pF1KE6 LRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQQFR
        ::  :  ::. :: .::.... :.:  :  :.   ::                      
NP_037 YRGTSDWKNSVISGCITGGAIGFRAGLKA--GAIGCGGFAAFSAAIDYYLR         
         150       160       170         180       190             

            150       160       170  
pF1KE6 NAPPFLEDPSQLPPKDGTPAPGYPSYQQYH




172 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:12:32 2016 done: Tue Nov  8 10:12:32 2016
 Total Scan time:  5.060 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]