FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6190, 172 aa
  1>>>pF1KE6190 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4284+/-0.000596; mu= 13.0867+/- 0.036
 mean_var=79.2882+/-16.107, 0's: 0 Z-trim(114.4): 7  B-trim: 116 in 1/51
 Lambda= 0.144036
 statistics sampled from 14928 (14934) to 14928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.459), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS14308.1 TIMM17B gene_id:10245|Hs108|chrX       ( 172) 1190 255.6 1.1e-68
CCDS1417.1 TIMM17A gene_id:10440|Hs108|chr1        ( 171)  928 201.1 2.7e-52
CCDS55411.1 TIMM17B gene_id:10245|Hs108|chrX       ( 222)  889 193.1 9.3e-50


>>CCDS14308.1 TIMM17B gene_id:10245|Hs108|chrX            (172 aa)
 initn: 1190 init1: 1190 opt: 1190  Z-score: 1346.4  bits: 255.6 E(32554): 1.1e-68
Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
              130       140       150       160       170  

>>CCDS1417.1 TIMM17A gene_id:10440|Hs108|chr1             (171 aa)
 initn: 908 init1: 908 opt: 928  Z-score: 1052.2  bits: 201.1 E(32554): 2.7e-52
Smith-Waterman score: 928; 75.6% identity (90.7% similar) in 172 aa overlap (1-172:1-171)

               10        20        30        40        50        60
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP
       ::::::::::::::::::::::::.::::.:::::::::.:::. :::::: .:.. :::
CCDS14 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG
       :.:::::::::::: :::..:..::::::::::::::::::.::::.::.:::::: :::
CCDS14 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::.::::::... :: :.: : :::::::  .  :.  . .:.::.
CCDS14 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQ-LPSSPFGDYRQYQ
              130       140       150        160       170 

>>CCDS55411.1 TIMM17B gene_id:10245|Hs108|chrX            (222 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 1006.8  bits: 193.1 E(32554): 9.3e-50
Smith-Waterman score: 933; 75.5% identity (75.5% similar) in 204 aa overlap (19-172:19-222)

               10        20        30        40                    
pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPV------------------
                         ::::::::::::::::::::::::                  
CCDS55 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVCRLLSEAPLFIYSCSRSV
               10        20        30        40        50        60

                                             50        60        70
pF1KE6 --------------------------------GIRHRLRGSANAVRIRAPQIGGSFAVWG
                                       ::::::::::::::::::::::::::::
CCDS55 SPTVNVSSERAESRPTLFMAVSLHMAWCLAHIGIRHRLRGSANAVRIRAPQIGGSFAVWG
               70        80        90       100       110       120

               80        90       100       110       120       130
pF1KE6 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG
              130       140       150       160       170       180

              140       150       160       170  
pF1KE6 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
       ::::::::::::::::::::::::::::::::::::::::::
CCDS55 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH
              190       200       210       220  




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:12:31 2016 done: Tue Nov  8 10:12:32 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]