FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6189, 171 aa
  1>>>pF1KE6189 171 - 171 aa - 171 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2642+/-0.000811; mu= 12.0530+/- 0.049
 mean_var=55.5128+/-10.934, 0's: 0 Z-trim(106.0): 26  B-trim: 0 in 0/52
 Lambda= 0.172138
 statistics sampled from 8726 (8739) to 8726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS8394.1 CD3D gene_id:915|Hs108|chr11            ( 171) 1133 289.2 8.2e-79
CCDS41724.1 CD3D gene_id:915|Hs108|chr11           ( 127)  594 155.3 1.2e-38
CCDS8395.1 CD3G gene_id:917|Hs108|chr11            ( 182)  428 114.1 4.4e-26


>>CCDS8394.1 CD3D gene_id:915|Hs108|chr11                 (171 aa)
 initn: 1133 init1: 1133 opt: 1133  Z-score: 1528.4  bits: 289.2 E(32554): 8.2e-79
Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL
               70        80        90       100       110       120

              130       140       150       160       170 
pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
              130       140       150       160       170 

>>CCDS41724.1 CD3D gene_id:915|Hs108|chr11                (127 aa)
 initn: 825 init1: 594 opt: 594  Z-score: 807.1  bits: 155.3 E(32554): 1.2e-38
Smith-Waterman score: 741; 73.7% identity (74.3% similar) in 171 aa overlap (1-171:1-127)

               10        20        30        40        50        60
pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL
       :::::::::::::::::::::::::::::::                             
CCDS41 GKRILDPRGIYRCNGTDIYKDKESTVQVHYR-----------------------------
               70        80        90                              

              130       140       150       160       170 
pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
                      .:::::::::::::::::::::::::::::::::::
CCDS41 ---------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
                            100       110       120       

>>CCDS8395.1 CD3G gene_id:917|Hs108|chr11                 (182 aa)
 initn: 410 init1: 323 opt: 428  Z-score: 581.8  bits: 114.1 E(32554): 4.4e-26
Smith-Waterman score: 433; 39.3% identity (70.5% similar) in 183 aa overlap (1-169:1-180)

               10           20            30             40        
pF1KE6 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEELED--RVFVNCNT---SITWV-EGT
       ::..  :. :.:: .: :   .. .:    . . . ..   :...:..   .:::  .: 
CCDS83 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KE6 -VGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG
        .: :  :  . .::.   ::::.:.:.:.   ..: . .::.:::::.:.::. ::..:
CCDS83 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG
               70        80        90          100       110       

        110       120       130       140       150       160      
pF1KE6 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN
       .. ..... ..::.::. .::..  : : :.: :.:: :::.::::.::.: ::::: ::
CCDS83 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN
       120       130       140       150       160       170       

        170 
pF1KE6 WARNK
         :  
CCDS83 QLRRN
       180  




171 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:11:57 2016 done: Tue Nov  8 10:11:57 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]