FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6186, 168 aa
  1>>>pF1KE6186 168 - 168 aa - 168 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8752+/-0.000352; mu= 15.2481+/- 0.022
 mean_var=63.3923+/-12.931, 0's: 0 Z-trim(114.7): 22  B-trim: 821 in 2/55
 Lambda= 0.161085
 statistics sampled from 24642 (24651) to 24642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.289), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
NP_001001975 (OMIM: 603150) ATP synthase subunit d ( 168) 1035 248.6 3.5e-66
NP_001678 (OMIM: 603150) ATP synthase subunit delt ( 168) 1035 248.6 3.5e-66


>>NP_001001975 (OMIM: 603150) ATP synthase subunit delta  (168 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1309.1  bits: 248.6 E(85289): 3.5e-66
Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KE6 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
               70        80        90       100       110       120

              130       140       150       160        
pF1KE6 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
              130       140       150       160        

>>NP_001678 (OMIM: 603150) ATP synthase subunit delta, m  (168 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1309.1  bits: 248.6 E(85289): 3.5e-66
Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KE6 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
               70        80        90       100       110       120

              130       140       150       160        
pF1KE6 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
              130       140       150       160        




168 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:10:55 2016 done: Tue Nov  8 10:10:56 2016
 Total Scan time:  3.970 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]