FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6186, 168 aa
  1>>>pF1KE6186 168 - 168 aa - 168 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6254+/-0.000763; mu= 10.8862+/- 0.046
 mean_var=61.1566+/-12.685, 0's: 0 Z-trim(108.2): 13  B-trim: 248 in 1/50
 Lambda= 0.164003
 statistics sampled from 10027 (10032) to 10027 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.308), width:  16
 Scan time:  1.270

The best scores are:                                      opt bits E(32554)
CCDS12058.1 ATP5D gene_id:513|Hs108|chr19          ( 168) 1035 252.8 7.3e-68


>>CCDS12058.1 ATP5D gene_id:513|Hs108|chr19               (168 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1331.9  bits: 252.8 E(32554): 7.3e-68
Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KE6 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV
               70        80        90       100       110       120

              130       140       150       160        
pF1KE6 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE
              130       140       150       160        




168 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:10:54 2016 done: Tue Nov  8 10:10:55 2016
 Total Scan time:  1.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]