Result of FASTA (ccds) for
pFN21AE6184
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6184, 142 aa
1>>>pF1KE6184 142 - 142 aa - 142 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5371+/-0.00067; mu= 9.7281+/- 0.040
mean_var=57.2607+/-11.534, 0's: 0 Z-trim(109.3): 16 B-trim: 0 in 0/51
Lambda= 0.169491
statistics sampled from 10778 (10793) to 10778 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.332), width: 16
Scan time: 1.280
The best scores are: opt bits E(32554)
CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 ( 142) 918 232.1 8.8e-62
CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 ( 142) 588 151.4 1.7e-37
CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 ( 142) 588 151.4 1.7e-37
CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 ( 142) 485 126.2 6.6e-30
CCDS32347.1 HBM gene_id:3042|Hs108|chr16 ( 141) 364 96.6 5.3e-21
CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 ( 147) 322 86.4 6.8e-18
CCDS31376.1 HBD gene_id:3045|Hs108|chr11 ( 147) 321 86.1 8e-18
CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 ( 147) 318 85.4 1.3e-17
CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 ( 147) 318 85.4 1.3e-17
CCDS7753.1 HBB gene_id:3043|Hs108|chr11 ( 147) 316 84.9 1.9e-17
>>CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 (142 aa)
initn: 918 init1: 918 opt: 918 Z-score: 1222.6 bits: 232.1 E(32554): 8.8e-62
Smith-Waterman score: 918; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
70 80 90 100 110 120
130 140
pF1KE6 ALQASLDKFLSHVISALVSEYR
::::::::::::::::::::::
CCDS10 ALQASLDKFLSHVISALVSEYR
130 140
>>CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 (142 aa)
initn: 588 init1: 588 opt: 588 Z-score: 786.5 bits: 151.4 E(32554): 1.7e-37
Smith-Waterman score: 588; 62.0% identity (87.3% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
:.:: :.. :.: : :.:...: : .::::: ::.::.::::: :.::: ::.::..::
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
.::::::. :: ..::.:.:::::: ::: .:::::..:.::.:::::::: : :..:.:
CCDS10 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
70 80 90 100 110 120
130 140
pF1KE6 ALQASLDKFLSHVISALVSEYR
:..:::::::. : ..:.:.::
CCDS10 AVHASLDKFLASVSTVLTSKYR
130 140
>>CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 (142 aa)
initn: 588 init1: 588 opt: 588 Z-score: 786.5 bits: 151.4 E(32554): 1.7e-37
Smith-Waterman score: 588; 62.0% identity (87.3% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
:.:: :.. :.: : :.:...: : .::::: ::.::.::::: :.::: ::.::..::
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
.::::::. :: ..::.:.:::::: ::: .:::::..:.::.:::::::: : :..:.:
CCDS10 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
70 80 90 100 110 120
130 140
pF1KE6 ALQASLDKFLSHVISALVSEYR
:..:::::::. : ..:.:.::
CCDS10 AVHASLDKFLASVSTVLTSKYR
130 140
>>CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 (142 aa)
initn: 485 init1: 485 opt: 485 Z-score: 650.4 bits: 126.2 E(32554): 6.6e-30
Smith-Waterman score: 485; 52.1% identity (80.3% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
:.:. .:... ..: :..... . ::.::: ::. : ::::: :.:: :::.:.::::
CCDS10 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
.::. :.. ::. .::. ::: ::.::: :::::..:.::.:::::::: ..:.::.
CCDS10 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA
70 80 90 100 110 120
130 140
pF1KE6 ALQASLDKFLSHVISALVSEYR
.:. ::::: : :.:. .::
CCDS10 EAHAAWDKFLSVVSSVLTEKYR
130 140
>>CCDS32347.1 HBM gene_id:3042|Hs108|chr16 (141 aa)
initn: 364 init1: 364 opt: 364 Z-score: 490.6 bits: 96.6 E(32554): 5.3e-21
Smith-Waterman score: 364; 41.4% identity (70.7% similar) in 140 aa overlap (3-142:2-141)
10 20 30 40 50 60
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
:::..:: . .: .... . . .: : : : ..:.::.:: ::. ..:. .::
CCDS32 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHG
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
:.. :.. ::...:.: ::: :. ::: ::::::.: :: .:. :.:: : .:.
CCDS32 QRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTV
60 70 80 90 100 110
130 140
pF1KE6 ALQASLDKFLSHVISALVSEYR
.::. ::::. : .:. .::
CCDS32 QMQAAWDKFLTGVAVVLTEKYR
120 130 140
>>CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 (147 aa)
initn: 279 init1: 243 opt: 322 Z-score: 434.8 bits: 86.4 E(32554): 6.8e-18
Smith-Waterman score: 322; 39.3% identity (71.0% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL-DLSP-----GS
.. ::.: . .:: :. :: :.: : ....: :. .:. . .:: :.
CCDS77 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
.:.:::.:: .:. :...:::: ... ::.:: .:.::: .:.:::. :...:: :
CCDS77 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
60 70 80 90 100 110
120 130 140
pF1KE6 YPGDFSPALQASLDKFLSHVISALVSEYR
. .:.: .::: .:... : ::: :.:
CCDS77 FGKEFTPEVQASWQKMVTGVASALSSRYH
120 130 140
>>CCDS31376.1 HBD gene_id:3045|Hs108|chr11 (147 aa)
initn: 316 init1: 226 opt: 321 Z-score: 433.4 bits: 86.1 E(32554): 8e-18
Smith-Waterman score: 321; 40.7% identity (70.3% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF-SHLDLS-P----GS
:. :... : ::: :. :: . ::: : ....: :. .: : ::: : :.
CCDS31 MVHLTPEEKTAVNALWGKV--NVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
.:.:::.:: :.: .. .::.: ..: ::.:: .:.::: .:.:::. :. .:::.
CCDS31 PKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARN
60 70 80 90 100 110
120 130 140
pF1KE6 YPGDFSPALQASLDKFLSHVISALVSEYR
. .:.: .::. .: .. : .::. .:
CCDS31 FGKEFTPQMQAAYQKVVAGVANALAHKYH
120 130 140
>>CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 (147 aa)
initn: 275 init1: 239 opt: 318 Z-score: 429.5 bits: 85.4 E(32554): 1.3e-17
Smith-Waterman score: 318; 39.3% identity (71.0% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL-DLSP-----GS
.. ::.: . .:: :. :: :.: : ....: :. .:. . .:: :.
CCDS77 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
.:.:::.:: .:. :...:::: ... ::.:: .:.::: .:.:::. :...:: :
CCDS77 PKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
60 70 80 90 100 110
120 130 140
pF1KE6 YPGDFSPALQASLDKFLSHVISALVSEYR
. .:.: .::: .:... : ::: :.:
CCDS77 FGKEFTPEVQASWQKMVTAVASALSSRYH
120 130 140
>>CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 (147 aa)
initn: 306 init1: 228 opt: 318 Z-score: 429.5 bits: 85.4 E(32554): 1.3e-17
Smith-Waterman score: 318; 37.9% identity (71.0% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL-DLS-P----GS
..::..: : .::.:. :: ::: : ....: :. .:. . .:: : :.
CCDS77 MVHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
.:.:::.:: ... :.. .:.: :.. ::.:: .:.::: .:.:::. ... :: :
CCDS77 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH
60 70 80 90 100 110
120 130 140
pF1KE6 YPGDFSPALQASLDKFLSHVISALVSEYR
. .:.: .::. .:..: : ::. .:
CCDS77 FGKEFTPEVQAAWQKLVSAVAIALAHKYH
120 130 140
>>CCDS7753.1 HBB gene_id:3043|Hs108|chr11 (147 aa)
initn: 291 init1: 223 opt: 316 Z-score: 426.8 bits: 84.9 E(32554): 1.9e-17
Smith-Waterman score: 316; 40.0% identity (70.3% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE6 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF-SHLDLS-P----GS
:. :... : ::: :. :: ::: : ....: :. .: : ::: : :.
CCDS77 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
.:.:::.:: :.: .. .::.: ....::.:: .:.::: .:.:::. :. .::.:
CCDS77 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
60 70 80 90 100 110
120 130 140
pF1KE6 YPGDFSPALQASLDKFLSHVISALVSEYR
. .:.: .::. .: .. : .::. .:
CCDS77 FGKEFTPPVQAAYQKVVAGVANALAHKYH
120 130 140
142 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:09:56 2016 done: Tue Nov 8 10:09:57 2016
Total Scan time: 1.280 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]