Result of FASTA (ccds) for
pFN21AE6182
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6182, 142 aa
1>>>pF1KE6182 142 - 142 aa - 142 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7645+/-0.00084; mu= 9.2641+/- 0.050
mean_var=66.4009+/-13.622, 0's: 0 Z-trim(106.9): 18 B-trim: 0 in 0/51
Lambda= 0.157394
statistics sampled from 9218 (9231) to 9218 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.284), width: 16
Scan time: 1.090
The best scores are: opt bits E(32554)
CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2 ( 142) 896 211.8 1.1e-55
CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12 ( 141) 638 153.2 4.9e-38
CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12 ( 157) 638 153.2 5.4e-38
CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12 ( 198) 638 153.3 6.6e-38
CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17 ( 136) 586 141.4 1.7e-34
>>CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2 (142 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1113.0 bits: 211.8 E(32554): 1.1e-55
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
CCDS22 FALSEAMGLFCLMVAFLILFAM
130 140
>>CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12 (141 aa)
initn: 645 init1: 525 opt: 638 Z-score: 796.4 bits: 153.2 E(32554): 4.9e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:1-141)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: :
CCDS81 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
CCDS81 FALSEAMGLFCLMVAFLILFAM
120 130 140
>>CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12 (157 aa)
initn: 645 init1: 525 opt: 638 Z-score: 795.6 bits: 153.2 E(32554): 5.4e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:17-157)
10 20 30 40
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV
::::.:.. ::::... :.. ::.:: ::.::: : :. .
CCDS31 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSS
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
. . .: . .: :::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
60 70 80 90 100 110
110 120 130 140
pF1KE6 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::
CCDS31 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
120 130 140 150
>>CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12 (198 aa)
initn: 645 init1: 525 opt: 638 Z-score: 794.0 bits: 153.3 E(32554): 6.6e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:58-198)
10 20 30
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVL
::::.:.. ::::... :.. ::.:: ::
CCDS88 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 SRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
.::: : :. . . . .: . .: :::::::::::::::::::::::::::::::
CCDS88 KRPEIL-TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
90 100 110 120 130 140
100 110 120 130 140
pF1KE6 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
150 160 170 180 190
>>CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17 (136 aa)
initn: 603 init1: 533 opt: 586 Z-score: 732.8 bits: 141.4 E(32554): 1.7e-34
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-142:1-136)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
CCDS11 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
CCDS11 FALSEAMGLFCLMVAFLILFAM
120 130
142 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:09:29 2016 done: Tue Nov 8 10:09:29 2016
Total Scan time: 1.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]