FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6181, 125 aa
  1>>>pF1KE6181 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9197+/-0.000505; mu= 12.9853+/- 0.031
 mean_var=63.6766+/-12.707, 0's: 0 Z-trim(114.6): 9  B-trim: 0 in 0/51
 Lambda= 0.160725
 statistics sampled from 15184 (15192) to 15184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.467), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS31059.1 COA6 gene_id:388753|Hs108|chr1         ( 125)  895 214.9 1.1e-56
CCDS76275.1 COA6 gene_id:388753|Hs108|chr1         ( 155)  600 146.5 4.9e-36
CCDS55690.1 COA6 gene_id:388753|Hs108|chr1         (  79)  562 137.5 1.3e-33


>>CCDS31059.1 COA6 gene_id:388753|Hs108|chr1              (125 aa)
 initn: 895 init1: 895 opt: 895  Z-score: 1131.5  bits: 214.9 E(32554): 1.1e-56
Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE6 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE
               70        80        90       100       110       120

            
pF1KE6 TTAKS
       :::::
CCDS31 TTAKS
            

>>CCDS76275.1 COA6 gene_id:388753|Hs108|chr1              (155 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 760.5  bits: 146.5 E(32554): 4.9e-36
Smith-Waterman score: 600; 98.9% identity (98.9% similar) in 87 aa overlap (39-125:69-155)

       10        20        30        40        50        60        
pF1KE6 SPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKC
                                     : ::::::::::::::::::::::::::::
CCDS76 RTRHRALHRRLVACVTVSSRRHRKEAGRGRAESFIAVGMAAPSMKERQVCWGARDEYWKC
       40        50        60        70        80        90        

       70        80        90       100       110       120     
pF1KE6 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
      100       110       120       130       140       150     

>>CCDS55690.1 COA6 gene_id:388753|Hs108|chr1              (79 aa)
 initn: 562 init1: 562 opt: 562  Z-score: 717.0  bits: 137.5 E(32554): 1.3e-33
Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 79 aa overlap (47-125:1-79)

         20        30        40        50        60        70      
pF1KE6 CKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKCLDENLEDA
                                     ::::::::::::::::::::::::::::::
CCDS55                               MAAPSMKERQVCWGARDEYWKCLDENLEDA
                                             10        20        30

         80        90       100       110       120     
pF1KE6 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
               40        50        60        70         




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:08:50 2016 done: Tue Nov  8 10:08:50 2016
 Total Scan time:  1.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]