FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6179, 119 aa
  1>>>pF1KE6179 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9811+/-0.000355; mu= 11.4843+/- 0.022
 mean_var=50.5433+/- 9.762, 0's: 0 Z-trim(112.9): 18  B-trim: 22 in 1/52
 Lambda= 0.180402
 statistics sampled from 21937 (21939) to 21937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(85289)
NP_004222 (OMIM: 607160) V-type proton ATPase subu ( 119)  771 208.1 2.8e-54
NP_001185838 (OMIM: 607160) V-type proton ATPase s ( 147)  441 122.2 2.4e-28


>>NP_004222 (OMIM: 607160) V-type proton ATPase subunit   (119 aa)
 initn: 771 init1: 771 opt: 771  Z-score: 1095.4  bits: 208.1 E(85289): 2.8e-54
Smith-Waterman score: 771; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE6 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR
               70        80        90       100       110         

>>NP_001185838 (OMIM: 607160) V-type proton ATPase subun  (147 aa)
 initn: 437 init1: 437 opt: 441  Z-score: 629.8  bits: 122.2 E(85289): 2.4e-28
Smith-Waterman score: 705; 81.0% identity (81.0% similar) in 147 aa overlap (1-119:1-147)

               10        20        30        40        50          
pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
NP_001 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRSLGSLPG
               10        20        30        40        50        60

                                 60        70        80        90  
pF1KE6 ---------------------QFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP
                            :::::::::::::::::::::::::::::::::::::::
NP_001 SVVEANPNQRDPPLWDEIDSRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP
               70        80        90       100       110       120

            100       110         
pF1KE6 SKEHPYDAAKDSILRRARGMFTAEDLR
       :::::::::::::::::::::::::::
NP_001 SKEHPYDAAKDSILRRARGMFTAEDLR
              130       140       




119 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:07:47 2016 done: Tue Nov  8 10:07:47 2016
 Total Scan time:  3.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]