FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6179, 119 aa
  1>>>pF1KE6179 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8358+/-0.000756; mu= 12.3151+/- 0.046
 mean_var=49.3801+/- 9.552, 0's: 0 Z-trim(106.3): 7  B-trim: 8 in 2/49
 Lambda= 0.182515
 statistics sampled from 8908 (8910) to 8908 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.274), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS5807.1 ATP6V1F gene_id:9296|Hs108|chr7         ( 119)  771 210.2 2.5e-55
CCDS56511.1 ATP6V1F gene_id:9296|Hs108|chr7        ( 147)  441 123.3 4.3e-29


>>CCDS5807.1 ATP6V1F gene_id:9296|Hs108|chr7              (119 aa)
 initn: 771 init1: 771 opt: 771  Z-score: 1106.9  bits: 210.2 E(32554): 2.5e-55
Smith-Waterman score: 771; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE6 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR
               70        80        90       100       110         

>>CCDS56511.1 ATP6V1F gene_id:9296|Hs108|chr7             (147 aa)
 initn: 437 init1: 437 opt: 441  Z-score: 635.8  bits: 123.3 E(32554): 4.3e-29
Smith-Waterman score: 705; 81.0% identity (81.0% similar) in 147 aa overlap (1-119:1-147)

               10        20        30        40        50          
pF1KE6 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS56 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRSLGSLPG
               10        20        30        40        50        60

                                 60        70        80        90  
pF1KE6 ---------------------QFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP
                            :::::::::::::::::::::::::::::::::::::::
CCDS56 SVVEANPNQRDPPLWDEIDSRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP
               70        80        90       100       110       120

            100       110         
pF1KE6 SKEHPYDAAKDSILRRARGMFTAEDLR
       :::::::::::::::::::::::::::
CCDS56 SKEHPYDAAKDSILRRARGMFTAEDLR
              130       140       




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:07:46 2016 done: Tue Nov  8 10:07:46 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]